Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1268

Experiment: m.b. Cisplatin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1267 and B158DRAFT_1268 are separated by 41 nucleotidesB158DRAFT_1268 and B158DRAFT_1269 are separated by 11 nucleotides B158DRAFT_1267: B158DRAFT_1267 - Superfamily II DNA/RNA helicases, SNF2 family, at 1,302,034 to 1,304,916 _1267 B158DRAFT_1268: B158DRAFT_1268 - Adenine specific DNA methylase Mod, at 1,304,958 to 1,308,023 _1268 B158DRAFT_1269: B158DRAFT_1269 - Type III restriction enzyme, res subunit., at 1,308,035 to 1,311,379 _1269 Position (kb) 1304 1305 1306 1307 1308 1309Strain fitness (log2 ratio) -1 0 1at 1304.143 kb on - strand, within B158DRAFT_1267at 1304.145 kb on + strand, within B158DRAFT_1267at 1304.192 kb on - strand, within B158DRAFT_1267at 1304.208 kb on + strand, within B158DRAFT_1267at 1304.216 kb on - strand, within B158DRAFT_1267at 1304.340 kb on + strand, within B158DRAFT_1267at 1304.340 kb on + strand, within B158DRAFT_1267at 1304.340 kb on + strand, within B158DRAFT_1267at 1304.460 kb on - strand, within B158DRAFT_1267at 1304.653 kb on + strandat 1304.668 kb on - strandat 1304.758 kb on + strandat 1304.835 kb on + strandat 1304.973 kb on - strandat 1305.078 kb on + strandat 1305.086 kb on - strandat 1305.194 kb on + strandat 1305.202 kb on - strandat 1305.350 kb on + strand, within B158DRAFT_1268at 1305.468 kb on - strand, within B158DRAFT_1268at 1305.498 kb on - strand, within B158DRAFT_1268at 1305.600 kb on + strand, within B158DRAFT_1268at 1305.643 kb on + strand, within B158DRAFT_1268at 1305.766 kb on - strand, within B158DRAFT_1268at 1305.852 kb on + strand, within B158DRAFT_1268at 1306.138 kb on + strand, within B158DRAFT_1268at 1306.138 kb on + strand, within B158DRAFT_1268at 1306.138 kb on + strand, within B158DRAFT_1268at 1306.553 kb on + strand, within B158DRAFT_1268at 1306.720 kb on - strand, within B158DRAFT_1268at 1306.733 kb on + strand, within B158DRAFT_1268at 1306.805 kb on + strand, within B158DRAFT_1268at 1306.840 kb on - strand, within B158DRAFT_1268at 1306.933 kb on - strand, within B158DRAFT_1268at 1307.175 kb on + strand, within B158DRAFT_1268at 1307.183 kb on - strand, within B158DRAFT_1268at 1307.254 kb on + strand, within B158DRAFT_1268at 1307.368 kb on - strand, within B158DRAFT_1268at 1307.368 kb on - strand, within B158DRAFT_1268at 1307.375 kb on - strand, within B158DRAFT_1268at 1307.539 kb on - strand, within B158DRAFT_1268at 1307.544 kb on - strand, within B158DRAFT_1268at 1307.554 kb on + strand, within B158DRAFT_1268at 1307.581 kb on - strand, within B158DRAFT_1268at 1307.756 kb on + strandat 1307.878 kb on + strandat 1308.006 kb on + strandat 1308.164 kb on + strandat 1308.555 kb on + strand, within B158DRAFT_1269at 1308.673 kb on - strand, within B158DRAFT_1269at 1308.858 kb on - strand, within B158DRAFT_1269at 1308.860 kb on + strand, within B158DRAFT_1269at 1308.868 kb on - strand, within B158DRAFT_1269at 1308.868 kb on - strand, within B158DRAFT_1269

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml
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1,304,143 - B158DRAFT_1267 0.73 +0.0
1,304,145 + B158DRAFT_1267 0.73 +0.5
1,304,192 - B158DRAFT_1267 0.75 -0.1
1,304,208 + B158DRAFT_1267 0.75 -0.1
1,304,216 - B158DRAFT_1267 0.76 -0.6
1,304,340 + B158DRAFT_1267 0.80 -0.1
1,304,340 + B158DRAFT_1267 0.80 +0.1
1,304,340 + B158DRAFT_1267 0.80 +0.4
1,304,460 - B158DRAFT_1267 0.84 +0.3
1,304,653 + +0.3
1,304,668 - -0.3
1,304,758 + +0.2
1,304,835 + -0.4
1,304,973 - -0.3
1,305,078 + +0.2
1,305,086 - -0.2
1,305,194 + +0.6
1,305,202 - -0.3
1,305,350 + B158DRAFT_1268 0.13 -0.0
1,305,468 - B158DRAFT_1268 0.17 +0.4
1,305,498 - B158DRAFT_1268 0.18 -0.9
1,305,600 + B158DRAFT_1268 0.21 -0.2
1,305,643 + B158DRAFT_1268 0.22 -1.2
1,305,766 - B158DRAFT_1268 0.26 -1.0
1,305,852 + B158DRAFT_1268 0.29 -0.1
1,306,138 + B158DRAFT_1268 0.38 -0.4
1,306,138 + B158DRAFT_1268 0.38 -0.7
1,306,138 + B158DRAFT_1268 0.38 -0.3
1,306,553 + B158DRAFT_1268 0.52 +0.3
1,306,720 - B158DRAFT_1268 0.57 +0.2
1,306,733 + B158DRAFT_1268 0.58 -0.4
1,306,805 + B158DRAFT_1268 0.60 +1.1
1,306,840 - B158DRAFT_1268 0.61 +0.4
1,306,933 - B158DRAFT_1268 0.64 -0.0
1,307,175 + B158DRAFT_1268 0.72 +0.0
1,307,183 - B158DRAFT_1268 0.73 -0.1
1,307,254 + B158DRAFT_1268 0.75 -0.1
1,307,368 - B158DRAFT_1268 0.79 -0.1
1,307,368 - B158DRAFT_1268 0.79 +0.3
1,307,375 - B158DRAFT_1268 0.79 +0.2
1,307,539 - B158DRAFT_1268 0.84 +0.1
1,307,544 - B158DRAFT_1268 0.84 +0.5
1,307,554 + B158DRAFT_1268 0.85 -0.0
1,307,581 - B158DRAFT_1268 0.86 -0.4
1,307,756 + -0.0
1,307,878 + +0.3
1,308,006 + -0.8
1,308,164 + +0.6
1,308,555 + B158DRAFT_1269 0.16 -0.0
1,308,673 - B158DRAFT_1269 0.19 -0.3
1,308,858 - B158DRAFT_1269 0.25 +0.2
1,308,860 + B158DRAFT_1269 0.25 -0.5
1,308,868 - B158DRAFT_1269 0.25 +0.3
1,308,868 - B158DRAFT_1269 0.25 +0.3

Or see this region's nucleotide sequence