Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0091

Experiment: m.b. Cisplatin 0.0125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0090 and B158DRAFT_0091 are separated by 243 nucleotidesB158DRAFT_0091 and B158DRAFT_0092 are separated by 24 nucleotidesB158DRAFT_0092 and B158DRAFT_0093 are separated by 49 nucleotidesB158DRAFT_0093 and B158DRAFT_0094 are separated by 105 nucleotides B158DRAFT_0090: B158DRAFT_0090 - leucyl-tRNA synthetase (EC 6.1.1.4), at 83,824 to 86,457 _0090 B158DRAFT_0091: B158DRAFT_0091 - hypothetical protein, at 86,701 to 87,213 _0091 B158DRAFT_0092: B158DRAFT_0092 - hypothetical protein, at 87,238 to 87,447 _0092 B158DRAFT_0093: B158DRAFT_0093 - hypothetical protein, at 87,497 to 87,961 _0093 B158DRAFT_0094: B158DRAFT_0094 - hypothetical protein, at 88,067 to 88,285 _0094 Position (kb) 86 87 88Strain fitness (log2 ratio) -2 -1 0 1at 86.556 kb on + strandat 86.564 kb on - strandat 86.564 kb on - strandat 86.578 kb on + strandat 86.591 kb on + strandat 86.600 kb on + strandat 86.644 kb on - strandat 86.714 kb on + strandat 86.715 kb on - strandat 86.816 kb on + strand, within B158DRAFT_0091at 86.834 kb on - strand, within B158DRAFT_0091at 86.950 kb on - strand, within B158DRAFT_0091at 86.975 kb on + strand, within B158DRAFT_0091at 86.975 kb on + strand, within B158DRAFT_0091at 87.021 kb on + strand, within B158DRAFT_0091at 87.029 kb on - strand, within B158DRAFT_0091at 87.029 kb on - strand, within B158DRAFT_0091at 87.055 kb on + strand, within B158DRAFT_0091at 87.114 kb on + strand, within B158DRAFT_0091at 87.122 kb on - strand, within B158DRAFT_0091at 87.383 kb on - strand, within B158DRAFT_0092at 87.395 kb on - strand, within B158DRAFT_0092at 87.397 kb on - strand, within B158DRAFT_0092at 87.527 kb on + strandat 87.527 kb on + strandat 87.535 kb on - strandat 87.535 kb on - strandat 87.535 kb on - strandat 87.544 kb on - strand, within B158DRAFT_0093at 87.650 kb on - strand, within B158DRAFT_0093at 87.657 kb on - strand, within B158DRAFT_0093at 87.741 kb on - strand, within B158DRAFT_0093at 87.798 kb on + strand, within B158DRAFT_0093at 87.939 kb on + strandat 87.953 kb on - strandat 87.959 kb on - strandat 88.101 kb on - strand, within B158DRAFT_0094at 88.141 kb on + strand, within B158DRAFT_0094at 88.172 kb on - strand, within B158DRAFT_0094

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml
remove
86,556 + -0.2
86,564 - -0.2
86,564 - -0.8
86,578 + +0.9
86,591 + -0.0
86,600 + -0.1
86,644 - -0.2
86,714 + -0.6
86,715 - +0.3
86,816 + B158DRAFT_0091 0.22 -0.3
86,834 - B158DRAFT_0091 0.26 -0.8
86,950 - B158DRAFT_0091 0.49 +0.2
86,975 + B158DRAFT_0091 0.53 -0.1
86,975 + B158DRAFT_0091 0.53 +0.1
87,021 + B158DRAFT_0091 0.62 -0.2
87,029 - B158DRAFT_0091 0.64 -1.0
87,029 - B158DRAFT_0091 0.64 -0.2
87,055 + B158DRAFT_0091 0.69 -0.3
87,114 + B158DRAFT_0091 0.81 -2.0
87,122 - B158DRAFT_0091 0.82 -0.4
87,383 - B158DRAFT_0092 0.69 +0.3
87,395 - B158DRAFT_0092 0.75 +0.2
87,397 - B158DRAFT_0092 0.76 -0.5
87,527 + -0.1
87,527 + -0.0
87,535 - +0.0
87,535 - +1.0
87,535 - +0.2
87,544 - B158DRAFT_0093 0.10 +0.1
87,650 - B158DRAFT_0093 0.33 -0.6
87,657 - B158DRAFT_0093 0.34 -0.5
87,741 - B158DRAFT_0093 0.52 -0.2
87,798 + B158DRAFT_0093 0.65 -0.0
87,939 + -0.4
87,953 - -0.1
87,959 - +0.3
88,101 - B158DRAFT_0094 0.16 -0.0
88,141 + B158DRAFT_0094 0.34 -0.2
88,172 - B158DRAFT_0094 0.48 +0.1

Or see this region's nucleotide sequence