Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1908

Experiment: m.b. 2-Furfuraldehyde 0.035 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1906 and B158DRAFT_1907 are separated by 118 nucleotidesB158DRAFT_1907 and B158DRAFT_1908 are separated by 138 nucleotidesB158DRAFT_1908 and B158DRAFT_1909 are separated by 36 nucleotidesB158DRAFT_1909 and B158DRAFT_1910 are separated by 43 nucleotides B158DRAFT_1906: B158DRAFT_1906 - Response regulator containing a CheY-like receiver domain and a GGDEF domain, at 42,337 to 42,894 _1906 B158DRAFT_1907: B158DRAFT_1907 - Uncharacterized protein conserved in bacteria, at 43,013 to 43,621 _1907 B158DRAFT_1908: B158DRAFT_1908 - Glycine/serine hydroxymethyltransferase, at 43,760 to 45,013 _1908 B158DRAFT_1909: B158DRAFT_1909 - transcriptional regulator NrdR, at 45,050 to 45,508 _1909 B158DRAFT_1910: B158DRAFT_1910 - diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26), at 45,552 to 46,670 _1910 Position (kb) 43 44 45 46Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 42.827 kb on + strand, within B158DRAFT_1906at 42.835 kb on + strand, within B158DRAFT_1906at 42.835 kb on + strand, within B158DRAFT_1906at 42.835 kb on + strand, within B158DRAFT_1906at 42.840 kb on + strandat 42.843 kb on - strandat 42.843 kb on - strandat 42.890 kb on - strandat 43.011 kb on - strandat 43.064 kb on + strandat 43.064 kb on + strandat 43.064 kb on + strandat 43.064 kb on + strandat 43.064 kb on + strandat 43.072 kb on - strandat 43.072 kb on - strandat 43.082 kb on - strand, within B158DRAFT_1907at 43.113 kb on - strand, within B158DRAFT_1907at 43.129 kb on + strand, within B158DRAFT_1907at 43.160 kb on - strand, within B158DRAFT_1907at 43.170 kb on - strand, within B158DRAFT_1907at 43.236 kb on - strand, within B158DRAFT_1907at 43.287 kb on - strand, within B158DRAFT_1907at 43.324 kb on - strand, within B158DRAFT_1907at 43.429 kb on - strand, within B158DRAFT_1907at 43.454 kb on - strand, within B158DRAFT_1907at 43.458 kb on + strand, within B158DRAFT_1907at 43.461 kb on - strand, within B158DRAFT_1907at 43.483 kb on - strand, within B158DRAFT_1907at 43.507 kb on + strand, within B158DRAFT_1907at 43.513 kb on + strand, within B158DRAFT_1907at 43.516 kb on - strand, within B158DRAFT_1907at 43.539 kb on + strand, within B158DRAFT_1907at 43.548 kb on - strand, within B158DRAFT_1907at 43.549 kb on - strand, within B158DRAFT_1907at 43.554 kb on - strand, within B158DRAFT_1907at 43.563 kb on + strandat 43.568 kb on + strandat 43.568 kb on + strandat 43.576 kb on - strandat 43.576 kb on - strandat 43.615 kb on + strandat 43.623 kb on - strandat 43.643 kb on - strandat 43.690 kb on + strandat 43.690 kb on + strandat 43.698 kb on - strandat 43.698 kb on - strandat 43.750 kb on + strandat 43.765 kb on + strandat 43.765 kb on + strandat 43.765 kb on + strandat 43.773 kb on - strandat 43.773 kb on - strandat 43.845 kb on + strandat 43.853 kb on - strandat 43.895 kb on + strand, within B158DRAFT_1908at 43.902 kb on + strand, within B158DRAFT_1908at 43.902 kb on + strand, within B158DRAFT_1908at 43.902 kb on + strand, within B158DRAFT_1908at 43.907 kb on + strand, within B158DRAFT_1908at 43.910 kb on - strand, within B158DRAFT_1908at 43.915 kb on - strand, within B158DRAFT_1908at 43.930 kb on + strand, within B158DRAFT_1908at 43.945 kb on + strand, within B158DRAFT_1908at 43.975 kb on - strand, within B158DRAFT_1908at 44.022 kb on - strand, within B158DRAFT_1908at 44.032 kb on - strand, within B158DRAFT_1908at 44.043 kb on - strand, within B158DRAFT_1908at 44.055 kb on - strand, within B158DRAFT_1908at 44.069 kb on + strand, within B158DRAFT_1908at 44.080 kb on - strand, within B158DRAFT_1908at 44.080 kb on - strand, within B158DRAFT_1908at 44.081 kb on + strand, within B158DRAFT_1908at 44.086 kb on + strand, within B158DRAFT_1908at 44.086 kb on + strand, within B158DRAFT_1908at 44.086 kb on + strand, within B158DRAFT_1908at 44.094 kb on - strand, within B158DRAFT_1908at 44.094 kb on - strand, within B158DRAFT_1908at 44.122 kb on + strand, within B158DRAFT_1908at 44.124 kb on - strand, within B158DRAFT_1908at 44.130 kb on - strand, within B158DRAFT_1908at 44.130 kb on - strand, within B158DRAFT_1908at 44.201 kb on + strand, within B158DRAFT_1908at 44.215 kb on + strand, within B158DRAFT_1908at 44.231 kb on + strand, within B158DRAFT_1908at 44.238 kb on + strand, within B158DRAFT_1908at 44.239 kb on - strand, within B158DRAFT_1908at 44.239 kb on - strand, within B158DRAFT_1908at 44.285 kb on + strand, within B158DRAFT_1908at 44.292 kb on + strand, within B158DRAFT_1908at 44.375 kb on + strand, within B158DRAFT_1908at 44.375 kb on + strand, within B158DRAFT_1908at 44.383 kb on - strand, within B158DRAFT_1908at 44.397 kb on + strand, within B158DRAFT_1908at 44.499 kb on - strand, within B158DRAFT_1908at 44.517 kb on - strand, within B158DRAFT_1908at 44.542 kb on - strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.626 kb on + strand, within B158DRAFT_1908at 44.773 kb on + strand, within B158DRAFT_1908at 44.781 kb on - strand, within B158DRAFT_1908at 44.791 kb on + strand, within B158DRAFT_1908at 44.799 kb on - strand, within B158DRAFT_1908at 44.845 kb on - strand, within B158DRAFT_1908at 44.851 kb on - strand, within B158DRAFT_1908at 44.885 kb on + strand, within B158DRAFT_1908at 45.047 kb on + strandat 45.047 kb on + strandat 45.202 kb on + strand, within B158DRAFT_1909at 45.288 kb on + strand, within B158DRAFT_1909at 45.339 kb on + strand, within B158DRAFT_1909at 45.339 kb on + strand, within B158DRAFT_1909at 45.402 kb on + strand, within B158DRAFT_1909

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 2-Furfuraldehyde 0.035 vol%
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42,827 + B158DRAFT_1906 0.88 +0.1
42,835 + B158DRAFT_1906 0.89 -0.2
42,835 + B158DRAFT_1906 0.89 +0.7
42,835 + B158DRAFT_1906 0.89 +0.5
42,840 + -0.5
42,843 - +0.1
42,843 - +0.0
42,890 - +0.4
43,011 - -0.0
43,064 + -0.0
43,064 + +0.5
43,064 + -0.0
43,064 + +0.2
43,064 + +0.2
43,072 - -0.9
43,072 - +0.1
43,082 - B158DRAFT_1907 0.11 +0.5
43,113 - B158DRAFT_1907 0.16 +0.4
43,129 + B158DRAFT_1907 0.19 +0.1
43,160 - B158DRAFT_1907 0.24 +0.3
43,170 - B158DRAFT_1907 0.26 +0.5
43,236 - B158DRAFT_1907 0.37 -0.1
43,287 - B158DRAFT_1907 0.45 +0.4
43,324 - B158DRAFT_1907 0.51 +0.6
43,429 - B158DRAFT_1907 0.68 +0.8
43,454 - B158DRAFT_1907 0.72 +0.5
43,458 + B158DRAFT_1907 0.73 -0.1
43,461 - B158DRAFT_1907 0.74 -0.4
43,483 - B158DRAFT_1907 0.77 +0.2
43,507 + B158DRAFT_1907 0.81 -0.4
43,513 + B158DRAFT_1907 0.82 -0.4
43,516 - B158DRAFT_1907 0.83 +0.3
43,539 + B158DRAFT_1907 0.86 +0.1
43,548 - B158DRAFT_1907 0.88 +0.1
43,549 - B158DRAFT_1907 0.88 +0.8
43,554 - B158DRAFT_1907 0.89 +0.5
43,563 + +0.7
43,568 + +0.1
43,568 + -1.0
43,576 - +0.1
43,576 - +1.3
43,615 + -0.0
43,623 - -0.1
43,643 - +0.5
43,690 + +0.2
43,690 + -0.3
43,698 - -1.2
43,698 - -1.4
43,750 + +0.7
43,765 + -0.6
43,765 + -1.7
43,765 + -1.3
43,773 - -1.2
43,773 - -0.9
43,845 + -1.4
43,853 - -1.6
43,895 + B158DRAFT_1908 0.11 -0.0
43,902 + B158DRAFT_1908 0.11 -0.6
43,902 + B158DRAFT_1908 0.11 -1.3
43,902 + B158DRAFT_1908 0.11 -0.5
43,907 + B158DRAFT_1908 0.12 -0.7
43,910 - B158DRAFT_1908 0.12 -1.9
43,915 - B158DRAFT_1908 0.12 -0.9
43,930 + B158DRAFT_1908 0.14 -0.7
43,945 + B158DRAFT_1908 0.15 -1.6
43,975 - B158DRAFT_1908 0.17 -2.0
44,022 - B158DRAFT_1908 0.21 -1.0
44,032 - B158DRAFT_1908 0.22 -0.3
44,043 - B158DRAFT_1908 0.23 -1.2
44,055 - B158DRAFT_1908 0.24 -0.6
44,069 + B158DRAFT_1908 0.25 -0.7
44,080 - B158DRAFT_1908 0.26 -4.0
44,080 - B158DRAFT_1908 0.26 -0.8
44,081 + B158DRAFT_1908 0.26 -1.3
44,086 + B158DRAFT_1908 0.26 -1.0
44,086 + B158DRAFT_1908 0.26 -0.6
44,086 + B158DRAFT_1908 0.26 -0.4
44,094 - B158DRAFT_1908 0.27 -1.6
44,094 - B158DRAFT_1908 0.27 -3.0
44,122 + B158DRAFT_1908 0.29 -0.6
44,124 - B158DRAFT_1908 0.29 -0.0
44,130 - B158DRAFT_1908 0.30 -2.0
44,130 - B158DRAFT_1908 0.30 -2.1
44,201 + B158DRAFT_1908 0.35 -1.3
44,215 + B158DRAFT_1908 0.36 -1.6
44,231 + B158DRAFT_1908 0.38 -0.8
44,238 + B158DRAFT_1908 0.38 -1.3
44,239 - B158DRAFT_1908 0.38 -0.4
44,239 - B158DRAFT_1908 0.38 -0.7
44,285 + B158DRAFT_1908 0.42 -1.5
44,292 + B158DRAFT_1908 0.42 -1.3
44,375 + B158DRAFT_1908 0.49 -0.0
44,375 + B158DRAFT_1908 0.49 -1.7
44,383 - B158DRAFT_1908 0.50 -0.9
44,397 + B158DRAFT_1908 0.51 -0.7
44,499 - B158DRAFT_1908 0.59 -1.8
44,517 - B158DRAFT_1908 0.60 -1.2
44,542 - B158DRAFT_1908 0.62 -1.9
44,605 + B158DRAFT_1908 0.67 -0.3
44,605 + B158DRAFT_1908 0.67 -1.0
44,605 + B158DRAFT_1908 0.67 -0.7
44,605 + B158DRAFT_1908 0.67 -0.6
44,605 + B158DRAFT_1908 0.67 -0.7
44,605 + B158DRAFT_1908 0.67 -0.9
44,605 + B158DRAFT_1908 0.67 -0.6
44,605 + B158DRAFT_1908 0.67 +0.4
44,605 + B158DRAFT_1908 0.67 -0.9
44,605 + B158DRAFT_1908 0.67 +0.8
44,605 + B158DRAFT_1908 0.67 -0.5
44,605 + B158DRAFT_1908 0.67 -0.6
44,605 + B158DRAFT_1908 0.67 -1.6
44,613 - B158DRAFT_1908 0.68 -1.3
44,613 - B158DRAFT_1908 0.68 -1.4
44,613 - B158DRAFT_1908 0.68 -0.2
44,613 - B158DRAFT_1908 0.68 -1.3
44,613 - B158DRAFT_1908 0.68 -1.0
44,613 - B158DRAFT_1908 0.68 -2.5
44,613 - B158DRAFT_1908 0.68 -2.0
44,613 - B158DRAFT_1908 0.68 -1.1
44,613 - B158DRAFT_1908 0.68 -1.0
44,613 - B158DRAFT_1908 0.68 -0.7
44,626 + B158DRAFT_1908 0.69 -1.6
44,773 + B158DRAFT_1908 0.81 -0.3
44,781 - B158DRAFT_1908 0.81 -0.8
44,791 + B158DRAFT_1908 0.82 -1.1
44,799 - B158DRAFT_1908 0.83 -2.8
44,845 - B158DRAFT_1908 0.87 +1.2
44,851 - B158DRAFT_1908 0.87 -1.3
44,885 + B158DRAFT_1908 0.90 -0.7
45,047 + -0.2
45,047 + -0.0
45,202 + B158DRAFT_1909 0.33 -2.7
45,288 + B158DRAFT_1909 0.52 -0.0
45,339 + B158DRAFT_1909 0.63 -1.6
45,339 + B158DRAFT_1909 0.63 -1.6
45,402 + B158DRAFT_1909 0.77 -0.0

Or see this region's nucleotide sequence