Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1778

Experiment: m.b. 2-Furfuraldehyde 0.035 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1777 and B158DRAFT_1778 are separated by 658 nucleotidesB158DRAFT_1778 and B158DRAFT_1779 are separated by 30 nucleotides B158DRAFT_1777: B158DRAFT_1777 - Collagen triple helix repeat (20 copies)., at 1,864,595 to 1,866,811 _1777 B158DRAFT_1778: B158DRAFT_1778 - diguanylate cyclase (GGDEF) domain, at 1,867,470 to 1,868,744 _1778 B158DRAFT_1779: B158DRAFT_1779 - ATP-dependent helicase HrpA, at 1,868,775 to 1,872,734 _1779 Position (kb) 1867 1868 1869Strain fitness (log2 ratio) -2 -1 0 1 2at 1866.473 kb on - strand, within B158DRAFT_1777at 1866.519 kb on + strand, within B158DRAFT_1777at 1866.519 kb on + strand, within B158DRAFT_1777at 1866.519 kb on + strand, within B158DRAFT_1777at 1866.553 kb on + strand, within B158DRAFT_1777at 1866.553 kb on + strand, within B158DRAFT_1777at 1866.561 kb on - strand, within B158DRAFT_1777at 1866.561 kb on - strand, within B158DRAFT_1777at 1866.561 kb on - strand, within B158DRAFT_1777at 1866.561 kb on - strand, within B158DRAFT_1777at 1866.561 kb on - strand, within B158DRAFT_1777at 1866.561 kb on - strand, within B158DRAFT_1777at 1866.591 kb on + strandat 1866.601 kb on + strandat 1866.601 kb on + strandat 1866.601 kb on + strandat 1866.601 kb on + strandat 1866.601 kb on + strandat 1866.601 kb on + strandat 1866.609 kb on - strandat 1866.609 kb on - strandat 1866.609 kb on - strandat 1866.617 kb on - strandat 1866.624 kb on - strandat 1866.626 kb on + strandat 1866.647 kb on - strandat 1866.655 kb on + strandat 1866.686 kb on + strandat 1866.702 kb on + strandat 1866.702 kb on + strandat 1866.707 kb on + strandat 1866.710 kb on - strandat 1866.715 kb on - strandat 1866.758 kb on + strandat 1866.764 kb on + strandat 1866.764 kb on + strandat 1866.764 kb on + strandat 1866.764 kb on + strandat 1866.764 kb on + strandat 1866.764 kb on + strandat 1866.764 kb on + strandat 1866.764 kb on + strandat 1866.771 kb on - strandat 1866.772 kb on - strandat 1866.772 kb on - strandat 1866.772 kb on - strandat 1866.772 kb on - strandat 1866.772 kb on - strandat 1866.781 kb on - strandat 1866.781 kb on - strandat 1866.800 kb on - strandat 1866.806 kb on - strandat 1867.119 kb on + strandat 1867.119 kb on + strandat 1867.127 kb on - strandat 1867.209 kb on + strandat 1867.365 kb on + strandat 1867.374 kb on - strandat 1867.384 kb on - strandat 1867.387 kb on + strandat 1867.395 kb on - strandat 1867.486 kb on + strandat 1867.561 kb on - strandat 1867.563 kb on + strandat 1867.571 kb on - strandat 1867.577 kb on - strandat 1867.616 kb on + strand, within B158DRAFT_1778at 1867.669 kb on - strand, within B158DRAFT_1778at 1867.707 kb on + strand, within B158DRAFT_1778at 1867.715 kb on - strand, within B158DRAFT_1778at 1867.715 kb on - strand, within B158DRAFT_1778at 1867.754 kb on + strand, within B158DRAFT_1778at 1867.773 kb on + strand, within B158DRAFT_1778at 1867.827 kb on + strand, within B158DRAFT_1778at 1867.904 kb on - strand, within B158DRAFT_1778at 1867.909 kb on - strand, within B158DRAFT_1778at 1867.942 kb on + strand, within B158DRAFT_1778at 1867.950 kb on - strand, within B158DRAFT_1778at 1867.954 kb on - strand, within B158DRAFT_1778at 1867.968 kb on - strand, within B158DRAFT_1778at 1868.023 kb on + strand, within B158DRAFT_1778at 1868.030 kb on - strand, within B158DRAFT_1778at 1868.031 kb on - strand, within B158DRAFT_1778at 1868.031 kb on - strand, within B158DRAFT_1778at 1868.031 kb on - strand, within B158DRAFT_1778at 1868.031 kb on - strand, within B158DRAFT_1778at 1868.103 kb on + strand, within B158DRAFT_1778at 1868.103 kb on + strand, within B158DRAFT_1778at 1868.103 kb on + strand, within B158DRAFT_1778at 1868.103 kb on + strand, within B158DRAFT_1778at 1868.111 kb on - strand, within B158DRAFT_1778at 1868.281 kb on + strand, within B158DRAFT_1778at 1868.294 kb on + strand, within B158DRAFT_1778at 1868.294 kb on + strand, within B158DRAFT_1778at 1868.301 kb on + strand, within B158DRAFT_1778at 1868.302 kb on - strand, within B158DRAFT_1778at 1868.302 kb on - strand, within B158DRAFT_1778at 1868.311 kb on + strand, within B158DRAFT_1778at 1868.311 kb on + strand, within B158DRAFT_1778at 1868.319 kb on - strand, within B158DRAFT_1778at 1868.319 kb on - strand, within B158DRAFT_1778at 1868.319 kb on - strand, within B158DRAFT_1778at 1868.356 kb on + strand, within B158DRAFT_1778at 1868.378 kb on + strand, within B158DRAFT_1778at 1868.402 kb on - strand, within B158DRAFT_1778at 1868.463 kb on + strand, within B158DRAFT_1778at 1868.463 kb on - strand, within B158DRAFT_1778at 1868.471 kb on - strand, within B158DRAFT_1778at 1868.489 kb on - strand, within B158DRAFT_1778at 1868.653 kb on - strandat 1868.719 kb on + strandat 1868.719 kb on + strandat 1868.719 kb on + strandat 1868.719 kb on + strandat 1868.719 kb on + strandat 1868.719 kb on + strandat 1868.727 kb on - strandat 1868.727 kb on - strandat 1868.727 kb on - strandat 1868.850 kb on + strandat 1868.923 kb on + strandat 1868.923 kb on + strandat 1868.923 kb on + strandat 1868.923 kb on + strandat 1868.923 kb on + strandat 1868.923 kb on + strandat 1868.923 kb on + strandat 1868.923 kb on + strandat 1868.923 kb on + strandat 1868.923 kb on + strandat 1868.923 kb on + strandat 1868.931 kb on - strandat 1868.931 kb on - strandat 1868.931 kb on - strandat 1868.931 kb on - strandat 1868.931 kb on - strandat 1868.931 kb on - strandat 1868.931 kb on - strandat 1868.931 kb on - strandat 1868.933 kb on + strandat 1868.941 kb on - strandat 1868.941 kb on - strandat 1868.951 kb on + strandat 1868.959 kb on - strandat 1869.005 kb on + strandat 1869.301 kb on + strand, within B158DRAFT_1779at 1869.305 kb on + strand, within B158DRAFT_1779at 1869.324 kb on + strand, within B158DRAFT_1779at 1869.324 kb on + strand, within B158DRAFT_1779at 1869.324 kb on + strand, within B158DRAFT_1779at 1869.332 kb on - strand, within B158DRAFT_1779at 1869.332 kb on - strand, within B158DRAFT_1779at 1869.332 kb on - strand, within B158DRAFT_1779at 1869.332 kb on - strand, within B158DRAFT_1779at 1869.332 kb on - strand, within B158DRAFT_1779at 1869.332 kb on - strand, within B158DRAFT_1779at 1869.332 kb on - strand, within B158DRAFT_1779at 1869.332 kb on - strand, within B158DRAFT_1779at 1869.332 kb on - strand, within B158DRAFT_1779at 1869.350 kb on + strand, within B158DRAFT_1779at 1869.350 kb on + strand, within B158DRAFT_1779at 1869.358 kb on - strand, within B158DRAFT_1779at 1869.420 kb on + strand, within B158DRAFT_1779at 1869.470 kb on + strand, within B158DRAFT_1779at 1869.539 kb on - strand, within B158DRAFT_1779at 1869.612 kb on + strand, within B158DRAFT_1779at 1869.612 kb on + strand, within B158DRAFT_1779at 1869.657 kb on - strand, within B158DRAFT_1779at 1869.691 kb on - strand, within B158DRAFT_1779at 1869.691 kb on - strand, within B158DRAFT_1779at 1869.691 kb on - strand, within B158DRAFT_1779

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 2-Furfuraldehyde 0.035 vol%
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1,866,473 - B158DRAFT_1777 0.85 -0.2
1,866,519 + B158DRAFT_1777 0.87 +0.7
1,866,519 + B158DRAFT_1777 0.87 +0.4
1,866,519 + B158DRAFT_1777 0.87 -0.8
1,866,553 + B158DRAFT_1777 0.88 +0.1
1,866,553 + B158DRAFT_1777 0.88 -0.2
1,866,561 - B158DRAFT_1777 0.89 +0.2
1,866,561 - B158DRAFT_1777 0.89 +0.9
1,866,561 - B158DRAFT_1777 0.89 -2.1
1,866,561 - B158DRAFT_1777 0.89 -0.3
1,866,561 - B158DRAFT_1777 0.89 +0.0
1,866,561 - B158DRAFT_1777 0.89 +0.2
1,866,591 + +0.4
1,866,601 + -0.0
1,866,601 + +0.3
1,866,601 + +0.1
1,866,601 + -0.1
1,866,601 + -0.6
1,866,601 + +0.3
1,866,609 - +0.2
1,866,609 - -0.5
1,866,609 - +0.6
1,866,617 - -0.7
1,866,624 - +0.2
1,866,626 + +0.5
1,866,647 - +0.6
1,866,655 + -0.1
1,866,686 + -0.3
1,866,702 + -0.8
1,866,702 + -0.6
1,866,707 + +0.4
1,866,710 - -0.2
1,866,715 - +0.1
1,866,758 + -0.1
1,866,764 + -0.2
1,866,764 + -0.6
1,866,764 + +0.5
1,866,764 + -0.1
1,866,764 + +0.1
1,866,764 + +0.1
1,866,764 + +0.1
1,866,764 + +0.3
1,866,771 - -0.2
1,866,772 - +0.4
1,866,772 - +0.3
1,866,772 - -0.1
1,866,772 - +0.1
1,866,772 - -1.2
1,866,781 - +0.1
1,866,781 - +0.0
1,866,800 - +0.1
1,866,806 - +0.2
1,867,119 + +0.2
1,867,119 + -0.0
1,867,127 - +0.1
1,867,209 + +1.2
1,867,365 + -0.4
1,867,374 - -0.3
1,867,384 - +0.8
1,867,387 + +0.2
1,867,395 - -0.4
1,867,486 + +0.3
1,867,561 - +0.2
1,867,563 + +0.3
1,867,571 - -0.3
1,867,577 - +0.2
1,867,616 + B158DRAFT_1778 0.11 +0.2
1,867,669 - B158DRAFT_1778 0.16 -0.8
1,867,707 + B158DRAFT_1778 0.19 +0.4
1,867,715 - B158DRAFT_1778 0.19 -0.5
1,867,715 - B158DRAFT_1778 0.19 +0.2
1,867,754 + B158DRAFT_1778 0.22 +0.3
1,867,773 + B158DRAFT_1778 0.24 -0.1
1,867,827 + B158DRAFT_1778 0.28 -0.1
1,867,904 - B158DRAFT_1778 0.34 +0.9
1,867,909 - B158DRAFT_1778 0.34 -0.6
1,867,942 + B158DRAFT_1778 0.37 -0.1
1,867,950 - B158DRAFT_1778 0.38 +0.1
1,867,954 - B158DRAFT_1778 0.38 +0.1
1,867,968 - B158DRAFT_1778 0.39 +0.5
1,868,023 + B158DRAFT_1778 0.43 +0.5
1,868,030 - B158DRAFT_1778 0.44 +0.9
1,868,031 - B158DRAFT_1778 0.44 +0.1
1,868,031 - B158DRAFT_1778 0.44 -1.0
1,868,031 - B158DRAFT_1778 0.44 +0.3
1,868,031 - B158DRAFT_1778 0.44 -0.9
1,868,103 + B158DRAFT_1778 0.50 +0.2
1,868,103 + B158DRAFT_1778 0.50 -0.8
1,868,103 + B158DRAFT_1778 0.50 +0.3
1,868,103 + B158DRAFT_1778 0.50 -1.6
1,868,111 - B158DRAFT_1778 0.50 +0.2
1,868,281 + B158DRAFT_1778 0.64 -0.6
1,868,294 + B158DRAFT_1778 0.65 -0.0
1,868,294 + B158DRAFT_1778 0.65 -0.1
1,868,301 + B158DRAFT_1778 0.65 -0.9
1,868,302 - B158DRAFT_1778 0.65 -0.1
1,868,302 - B158DRAFT_1778 0.65 -0.3
1,868,311 + B158DRAFT_1778 0.66 -0.7
1,868,311 + B158DRAFT_1778 0.66 -0.1
1,868,319 - B158DRAFT_1778 0.67 -0.1
1,868,319 - B158DRAFT_1778 0.67 -0.2
1,868,319 - B158DRAFT_1778 0.67 +0.4
1,868,356 + B158DRAFT_1778 0.69 -0.1
1,868,378 + B158DRAFT_1778 0.71 +0.8
1,868,402 - B158DRAFT_1778 0.73 +0.1
1,868,463 + B158DRAFT_1778 0.78 -0.9
1,868,463 - B158DRAFT_1778 0.78 -1.1
1,868,471 - B158DRAFT_1778 0.79 +0.2
1,868,489 - B158DRAFT_1778 0.80 -0.4
1,868,653 - -0.4
1,868,719 + +0.6
1,868,719 + -0.3
1,868,719 + +0.5
1,868,719 + -0.5
1,868,719 + -0.1
1,868,719 + -1.0
1,868,727 - -0.9
1,868,727 - -0.0
1,868,727 - +0.4
1,868,850 + -0.7
1,868,923 + +0.4
1,868,923 + +0.3
1,868,923 + +1.4
1,868,923 + +0.1
1,868,923 + +0.4
1,868,923 + +0.7
1,868,923 + +0.1
1,868,923 + +1.0
1,868,923 + -0.1
1,868,923 + -0.4
1,868,923 + +0.1
1,868,931 - -0.4
1,868,931 - +0.3
1,868,931 - +0.3
1,868,931 - +0.4
1,868,931 - +0.5
1,868,931 - -0.4
1,868,931 - +0.5
1,868,931 - +0.4
1,868,933 + +0.7
1,868,941 - -0.2
1,868,941 - -0.0
1,868,951 + -0.2
1,868,959 - +0.1
1,869,005 + +0.3
1,869,301 + B158DRAFT_1779 0.13 +0.2
1,869,305 + B158DRAFT_1779 0.13 -0.2
1,869,324 + B158DRAFT_1779 0.14 +0.7
1,869,324 + B158DRAFT_1779 0.14 +0.5
1,869,324 + B158DRAFT_1779 0.14 -0.1
1,869,332 - B158DRAFT_1779 0.14 +0.7
1,869,332 - B158DRAFT_1779 0.14 -0.0
1,869,332 - B158DRAFT_1779 0.14 -0.1
1,869,332 - B158DRAFT_1779 0.14 +0.5
1,869,332 - B158DRAFT_1779 0.14 +0.5
1,869,332 - B158DRAFT_1779 0.14 +1.9
1,869,332 - B158DRAFT_1779 0.14 +0.2
1,869,332 - B158DRAFT_1779 0.14 -0.7
1,869,332 - B158DRAFT_1779 0.14 +0.4
1,869,350 + B158DRAFT_1779 0.15 +0.6
1,869,350 + B158DRAFT_1779 0.15 +0.0
1,869,358 - B158DRAFT_1779 0.15 +0.2
1,869,420 + B158DRAFT_1779 0.16 -0.2
1,869,470 + B158DRAFT_1779 0.18 +0.0
1,869,539 - B158DRAFT_1779 0.19 +0.3
1,869,612 + B158DRAFT_1779 0.21 +0.4
1,869,612 + B158DRAFT_1779 0.21 -0.1
1,869,657 - B158DRAFT_1779 0.22 +0.3
1,869,691 - B158DRAFT_1779 0.23 -0.1
1,869,691 - B158DRAFT_1779 0.23 -0.6
1,869,691 - B158DRAFT_1779 0.23 -0.0

Or see this region's nucleotide sequence