Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1228

Experiment: m.b. 2-Furfuraldehyde 0.035 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1227 and B158DRAFT_1228 are separated by 212 nucleotidesB158DRAFT_1228 and B158DRAFT_1229 are separated by 72 nucleotidesB158DRAFT_1229 and B158DRAFT_1230 are separated by 1 nucleotides B158DRAFT_1227: B158DRAFT_1227 - ABC-type spermidine/putrescine transport systems, ATPase components, at 1,266,840 to 1,267,910 _1227 B158DRAFT_1228: B158DRAFT_1228 - monothiol glutaredoxin, Grx4 family, at 1,268,123 to 1,268,452 _1228 B158DRAFT_1229: B158DRAFT_1229 - Uncharacterized conserved protein, at 1,268,525 to 1,269,235 _1229 B158DRAFT_1230: B158DRAFT_1230 - Glycerophosphoryl diester phosphodiesterase, at 1,269,237 to 1,269,917 _1230 Position (kb) 1268 1269Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1268.002 kb on - strandat 1268.048 kb on - strandat 1268.133 kb on + strandat 1268.141 kb on - strandat 1268.172 kb on - strand, within B158DRAFT_1228at 1268.286 kb on + strand, within B158DRAFT_1228at 1268.341 kb on + strand, within B158DRAFT_1228at 1268.341 kb on + strand, within B158DRAFT_1228at 1268.341 kb on + strand, within B158DRAFT_1228at 1268.341 kb on + strand, within B158DRAFT_1228at 1268.349 kb on - strand, within B158DRAFT_1228at 1268.391 kb on + strand, within B158DRAFT_1228at 1268.409 kb on - strand, within B158DRAFT_1228at 1268.417 kb on + strand, within B158DRAFT_1228at 1268.447 kb on + strandat 1268.481 kb on - strandat 1268.531 kb on - strandat 1268.647 kb on - strand, within B158DRAFT_1229at 1268.673 kb on + strand, within B158DRAFT_1229at 1268.728 kb on + strand, within B158DRAFT_1229at 1268.731 kb on - strand, within B158DRAFT_1229at 1268.866 kb on + strand, within B158DRAFT_1229at 1268.881 kb on + strand, within B158DRAFT_1229at 1268.901 kb on + strand, within B158DRAFT_1229at 1268.942 kb on - strand, within B158DRAFT_1229at 1268.942 kb on - strand, within B158DRAFT_1229at 1268.964 kb on - strand, within B158DRAFT_1229at 1269.053 kb on - strand, within B158DRAFT_1229at 1269.225 kb on + strandat 1269.233 kb on - strandat 1269.243 kb on + strandat 1269.243 kb on - strandat 1269.267 kb on + strandat 1269.269 kb on - strandat 1269.276 kb on + strandat 1269.276 kb on + strandat 1269.284 kb on - strandat 1269.288 kb on + strandat 1269.306 kb on + strand, within B158DRAFT_1230at 1269.306 kb on + strand, within B158DRAFT_1230at 1269.307 kb on + strand, within B158DRAFT_1230at 1269.334 kb on + strand, within B158DRAFT_1230at 1269.419 kb on - strand, within B158DRAFT_1230at 1269.432 kb on + strand, within B158DRAFT_1230at 1269.448 kb on - strand, within B158DRAFT_1230

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 2-Furfuraldehyde 0.035 vol%
remove
1,268,002 - -1.8
1,268,048 - +0.2
1,268,133 + -1.3
1,268,141 - +0.2
1,268,172 - B158DRAFT_1228 0.15 -1.0
1,268,286 + B158DRAFT_1228 0.49 -1.6
1,268,341 + B158DRAFT_1228 0.66 -1.2
1,268,341 + B158DRAFT_1228 0.66 -3.9
1,268,341 + B158DRAFT_1228 0.66 -1.1
1,268,341 + B158DRAFT_1228 0.66 -1.7
1,268,349 - B158DRAFT_1228 0.68 -2.6
1,268,391 + B158DRAFT_1228 0.81 -1.8
1,268,409 - B158DRAFT_1228 0.87 -0.4
1,268,417 + B158DRAFT_1228 0.89 +1.5
1,268,447 + +0.1
1,268,481 - -0.0
1,268,531 - +0.4
1,268,647 - B158DRAFT_1229 0.17 +0.1
1,268,673 + B158DRAFT_1229 0.21 +1.0
1,268,728 + B158DRAFT_1229 0.29 -0.3
1,268,731 - B158DRAFT_1229 0.29 +1.1
1,268,866 + B158DRAFT_1229 0.48 +0.2
1,268,881 + B158DRAFT_1229 0.50 +0.1
1,268,901 + B158DRAFT_1229 0.53 +0.4
1,268,942 - B158DRAFT_1229 0.59 +0.1
1,268,942 - B158DRAFT_1229 0.59 -0.4
1,268,964 - B158DRAFT_1229 0.62 +0.7
1,269,053 - B158DRAFT_1229 0.74 -0.5
1,269,225 + -0.0
1,269,233 - +0.0
1,269,243 + -0.0
1,269,243 - +0.4
1,269,267 + +0.7
1,269,269 - +0.4
1,269,276 + -0.0
1,269,276 + +0.1
1,269,284 - +0.3
1,269,288 + -0.3
1,269,306 + B158DRAFT_1230 0.10 -0.8
1,269,306 + B158DRAFT_1230 0.10 -0.5
1,269,307 + B158DRAFT_1230 0.10 +0.1
1,269,334 + B158DRAFT_1230 0.14 -0.3
1,269,419 - B158DRAFT_1230 0.27 -0.1
1,269,432 + B158DRAFT_1230 0.29 +0.2
1,269,448 - B158DRAFT_1230 0.31 -0.1

Or see this region's nucleotide sequence