Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1227

Experiment: m.b. 2-Furfuraldehyde 0.035 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1226 and B158DRAFT_1227 are separated by 306 nucleotidesB158DRAFT_1227 and B158DRAFT_1228 are separated by 212 nucleotidesB158DRAFT_1228 and B158DRAFT_1229 are separated by 72 nucleotides B158DRAFT_1226: B158DRAFT_1226 - ribonucleoside-diphosphate reductase, alpha subunit, at 1,263,657 to 1,266,533 _1226 B158DRAFT_1227: B158DRAFT_1227 - ABC-type spermidine/putrescine transport systems, ATPase components, at 1,266,840 to 1,267,910 _1227 B158DRAFT_1228: B158DRAFT_1228 - monothiol glutaredoxin, Grx4 family, at 1,268,123 to 1,268,452 _1228 B158DRAFT_1229: B158DRAFT_1229 - Uncharacterized conserved protein, at 1,268,525 to 1,269,235 _1229 Position (kb) 1266 1267 1268Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1266.763 kb on + strandat 1266.763 kb on + strandat 1266.763 kb on + strandat 1266.763 kb on + strandat 1266.763 kb on + strandat 1266.771 kb on - strandat 1266.771 kb on - strandat 1266.771 kb on - strandat 1266.771 kb on - strandat 1266.772 kb on + strandat 1266.783 kb on + strandat 1266.783 kb on + strandat 1266.791 kb on - strandat 1266.797 kb on - strandat 1268.002 kb on - strandat 1268.048 kb on - strandat 1268.133 kb on + strandat 1268.141 kb on - strandat 1268.172 kb on - strand, within B158DRAFT_1228at 1268.286 kb on + strand, within B158DRAFT_1228at 1268.341 kb on + strand, within B158DRAFT_1228at 1268.341 kb on + strand, within B158DRAFT_1228at 1268.341 kb on + strand, within B158DRAFT_1228at 1268.341 kb on + strand, within B158DRAFT_1228at 1268.349 kb on - strand, within B158DRAFT_1228at 1268.391 kb on + strand, within B158DRAFT_1228at 1268.409 kb on - strand, within B158DRAFT_1228at 1268.417 kb on + strand, within B158DRAFT_1228at 1268.447 kb on + strandat 1268.481 kb on - strandat 1268.531 kb on - strandat 1268.647 kb on - strand, within B158DRAFT_1229at 1268.673 kb on + strand, within B158DRAFT_1229at 1268.728 kb on + strand, within B158DRAFT_1229at 1268.731 kb on - strand, within B158DRAFT_1229at 1268.866 kb on + strand, within B158DRAFT_1229at 1268.881 kb on + strand, within B158DRAFT_1229at 1268.901 kb on + strand, within B158DRAFT_1229

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 2-Furfuraldehyde 0.035 vol%
remove
1,266,763 + +1.5
1,266,763 + +0.5
1,266,763 + +0.2
1,266,763 + +1.0
1,266,763 + +1.1
1,266,771 - +0.5
1,266,771 - +0.6
1,266,771 - +0.8
1,266,771 - +1.0
1,266,772 + +1.3
1,266,783 + -0.3
1,266,783 + +0.0
1,266,791 - +0.3
1,266,797 - +0.5
1,268,002 - -1.8
1,268,048 - +0.2
1,268,133 + -1.3
1,268,141 - +0.2
1,268,172 - B158DRAFT_1228 0.15 -1.0
1,268,286 + B158DRAFT_1228 0.49 -1.6
1,268,341 + B158DRAFT_1228 0.66 -1.2
1,268,341 + B158DRAFT_1228 0.66 -3.9
1,268,341 + B158DRAFT_1228 0.66 -1.1
1,268,341 + B158DRAFT_1228 0.66 -1.7
1,268,349 - B158DRAFT_1228 0.68 -2.6
1,268,391 + B158DRAFT_1228 0.81 -1.8
1,268,409 - B158DRAFT_1228 0.87 -0.4
1,268,417 + B158DRAFT_1228 0.89 +1.5
1,268,447 + +0.1
1,268,481 - -0.0
1,268,531 - +0.4
1,268,647 - B158DRAFT_1229 0.17 +0.1
1,268,673 + B158DRAFT_1229 0.21 +1.0
1,268,728 + B158DRAFT_1229 0.29 -0.3
1,268,731 - B158DRAFT_1229 0.29 +1.1
1,268,866 + B158DRAFT_1229 0.48 +0.2
1,268,881 + B158DRAFT_1229 0.50 +0.1
1,268,901 + B158DRAFT_1229 0.53 +0.4

Or see this region's nucleotide sequence