Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1123

Experiment: m.b. 2-Furfuraldehyde 0.035 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1122 and B158DRAFT_1123 are separated by 320 nucleotidesB158DRAFT_1123 and B158DRAFT_1124 are separated by 550 nucleotides B158DRAFT_1122: B158DRAFT_1122 - aspartyl-tRNA synthetase (EC 6.1.1.12), at 1,161,092 to 1,162,864 _1122 B158DRAFT_1123: B158DRAFT_1123 - DNA-binding regulatory protein, YebC/PmpR family, at 1,163,185 to 1,163,928 _1123 B158DRAFT_1124: B158DRAFT_1124 - Holliday junction endonuclease RuvC (EC 3.1.22.4), at 1,164,479 to 1,165,009 _1124 Position (kb) 1163 1164Strain fitness (log2 ratio) -2 -1 0 1at 1162.806 kb on + strandat 1162.856 kb on + strandat 1163.040 kb on - strandat 1163.040 kb on - strandat 1163.186 kb on - strandat 1163.427 kb on - strand, within B158DRAFT_1123at 1163.442 kb on - strand, within B158DRAFT_1123at 1163.456 kb on - strand, within B158DRAFT_1123at 1163.550 kb on - strand, within B158DRAFT_1123at 1163.748 kb on - strand, within B158DRAFT_1123at 1163.801 kb on + strand, within B158DRAFT_1123at 1164.101 kb on + strandat 1164.158 kb on + strandat 1164.158 kb on + strandat 1164.166 kb on - strandat 1164.176 kb on - strandat 1164.176 kb on - strandat 1164.176 kb on - strandat 1164.272 kb on - strandat 1164.412 kb on - strandat 1164.512 kb on + strandat 1164.512 kb on + strandat 1164.585 kb on + strand, within B158DRAFT_1124at 1164.593 kb on - strand, within B158DRAFT_1124at 1164.593 kb on - strand, within B158DRAFT_1124at 1164.603 kb on - strand, within B158DRAFT_1124at 1164.615 kb on + strand, within B158DRAFT_1124at 1164.664 kb on + strand, within B158DRAFT_1124at 1164.730 kb on - strand, within B158DRAFT_1124at 1164.734 kb on + strand, within B158DRAFT_1124at 1164.747 kb on - strand, within B158DRAFT_1124at 1164.770 kb on + strand, within B158DRAFT_1124at 1164.832 kb on + strand, within B158DRAFT_1124at 1164.918 kb on - strand, within B158DRAFT_1124

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 2-Furfuraldehyde 0.035 vol%
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1,162,806 + -0.2
1,162,856 + -0.3
1,163,040 - +0.2
1,163,040 - +0.2
1,163,186 - -0.4
1,163,427 - B158DRAFT_1123 0.33 -0.8
1,163,442 - B158DRAFT_1123 0.35 -0.5
1,163,456 - B158DRAFT_1123 0.36 +0.3
1,163,550 - B158DRAFT_1123 0.49 +0.1
1,163,748 - B158DRAFT_1123 0.76 +0.4
1,163,801 + B158DRAFT_1123 0.83 -1.4
1,164,101 + +0.2
1,164,158 + -0.3
1,164,158 + +0.0
1,164,166 - +0.8
1,164,176 - +0.0
1,164,176 - -0.6
1,164,176 - -0.5
1,164,272 - +0.7
1,164,412 - +1.2
1,164,512 + -0.1
1,164,512 + -0.1
1,164,585 + B158DRAFT_1124 0.20 -0.1
1,164,593 - B158DRAFT_1124 0.21 -1.7
1,164,593 - B158DRAFT_1124 0.21 -0.1
1,164,603 - B158DRAFT_1124 0.23 -1.0
1,164,615 + B158DRAFT_1124 0.26 -1.2
1,164,664 + B158DRAFT_1124 0.35 -2.4
1,164,730 - B158DRAFT_1124 0.47 -2.1
1,164,734 + B158DRAFT_1124 0.48 +0.5
1,164,747 - B158DRAFT_1124 0.50 -2.4
1,164,770 + B158DRAFT_1124 0.55 -1.2
1,164,832 + B158DRAFT_1124 0.66 +0.7
1,164,918 - B158DRAFT_1124 0.83 +0.3

Or see this region's nucleotide sequence