Strain Fitness in Pseudomonas simiae WCS417 around PS417_15860

Experiment: 6-methoxy-2(3H)-benzoxazolone 1.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15855 and PS417_15860 are separated by 214 nucleotidesPS417_15860 and PS417_15865 are separated by 387 nucleotidesPS417_15865 and PS417_15870 overlap by 11 nucleotides PS417_15855: PS417_15855 - universal stress protein, at 3,472,535 to 3,473,461 _15855 PS417_15860: PS417_15860 - chromate transporter, at 3,473,676 to 3,474,881 _15860 PS417_15865: PS417_15865 - hypothetical protein, at 3,475,269 to 3,475,604 _15865 PS417_15870: PS417_15870 - histidine kinase, at 3,475,594 to 3,477,207 _15870 Position (kb) 3473 3474 3475Strain fitness (log2 ratio) -1 0 1at 3472.927 kb on + strand, within PS417_15855at 3473.040 kb on - strand, within PS417_15855at 3473.095 kb on + strand, within PS417_15855at 3473.096 kb on - strand, within PS417_15855at 3473.096 kb on - strand, within PS417_15855at 3473.114 kb on - strand, within PS417_15855at 3473.114 kb on - strand, within PS417_15855at 3473.251 kb on + strand, within PS417_15855at 3473.324 kb on + strand, within PS417_15855at 3473.324 kb on + strand, within PS417_15855at 3473.325 kb on - strand, within PS417_15855at 3473.339 kb on - strand, within PS417_15855at 3473.339 kb on - strand, within PS417_15855at 3473.511 kb on + strandat 3473.652 kb on + strandat 3473.829 kb on + strand, within PS417_15860at 3473.860 kb on + strand, within PS417_15860at 3473.861 kb on - strand, within PS417_15860at 3474.025 kb on + strand, within PS417_15860at 3474.113 kb on + strand, within PS417_15860at 3474.184 kb on + strand, within PS417_15860at 3474.415 kb on + strand, within PS417_15860at 3474.415 kb on + strand, within PS417_15860at 3474.415 kb on + strand, within PS417_15860at 3474.442 kb on + strand, within PS417_15860at 3474.729 kb on + strand, within PS417_15860at 3474.877 kb on + strandat 3474.880 kb on - strandat 3474.957 kb on - strandat 3475.168 kb on + strandat 3475.169 kb on - strandat 3475.169 kb on - strandat 3475.169 kb on - strandat 3475.353 kb on - strandat 3475.420 kb on + strand, within PS417_15865at 3475.443 kb on + strand, within PS417_15865at 3475.443 kb on + strand, within PS417_15865at 3475.444 kb on - strand, within PS417_15865at 3475.446 kb on + strand, within PS417_15865at 3475.446 kb on + strand, within PS417_15865at 3475.447 kb on - strand, within PS417_15865at 3475.447 kb on - strand, within PS417_15865at 3475.474 kb on - strand, within PS417_15865

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-methoxy-2(3H)-benzoxazolone 1.2 mM
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3,472,927 + PS417_15855 0.42 +0.1
3,473,040 - PS417_15855 0.54 +0.5
3,473,095 + PS417_15855 0.60 +0.2
3,473,096 - PS417_15855 0.61 -0.7
3,473,096 - PS417_15855 0.61 -1.4
3,473,114 - PS417_15855 0.62 -0.4
3,473,114 - PS417_15855 0.62 +0.0
3,473,251 + PS417_15855 0.77 -1.2
3,473,324 + PS417_15855 0.85 -0.1
3,473,324 + PS417_15855 0.85 +0.1
3,473,325 - PS417_15855 0.85 -0.1
3,473,339 - PS417_15855 0.87 +0.1
3,473,339 - PS417_15855 0.87 -0.4
3,473,511 + -0.4
3,473,652 + -1.4
3,473,829 + PS417_15860 0.13 -0.6
3,473,860 + PS417_15860 0.15 -0.9
3,473,861 - PS417_15860 0.15 -0.8
3,474,025 + PS417_15860 0.29 -0.2
3,474,113 + PS417_15860 0.36 +0.9
3,474,184 + PS417_15860 0.42 -0.8
3,474,415 + PS417_15860 0.61 -0.3
3,474,415 + PS417_15860 0.61 +0.2
3,474,415 + PS417_15860 0.61 -0.4
3,474,442 + PS417_15860 0.64 -0.7
3,474,729 + PS417_15860 0.87 -0.2
3,474,877 + -0.1
3,474,880 - -1.2
3,474,957 - +0.8
3,475,168 + +0.1
3,475,169 - -0.3
3,475,169 - +0.2
3,475,169 - -0.0
3,475,353 - +0.5
3,475,420 + PS417_15865 0.45 +0.5
3,475,443 + PS417_15865 0.52 -0.8
3,475,443 + PS417_15865 0.52 -1.2
3,475,444 - PS417_15865 0.52 -0.2
3,475,446 + PS417_15865 0.53 -0.6
3,475,446 + PS417_15865 0.53 -0.3
3,475,447 - PS417_15865 0.53 -0.0
3,475,447 - PS417_15865 0.53 -0.8
3,475,474 - PS417_15865 0.61 -0.7

Or see this region's nucleotide sequence