Strain Fitness in Pseudomonas simiae WCS417 around PS417_04025

Experiment: LB_noSalt with Chloride 1100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04015 and PS417_04020 are separated by 11 nucleotidesPS417_04020 and PS417_04025 are separated by 20 nucleotidesPS417_04025 and PS417_04030 are separated by 330 nucleotides PS417_04015: PS417_04015 - choline ABC transporter permease, at 902,148 to 902,801 _04015 PS417_04020: PS417_04020 - glycine/betaine ABC transporter substrate-binding protein, at 902,813 to 903,709 _04020 PS417_04025: PS417_04025 - glycine/betaine ABC transporter permease, at 903,730 to 904,446 _04025 PS417_04030: PS417_04030 - peptide chain release factor 3, at 904,777 to 906,360 _04030 Position (kb) 903 904 905Strain fitness (log2 ratio) -2 -1 0 1at 902.814 kb on + strandat 903.015 kb on + strand, within PS417_04020at 903.015 kb on + strand, within PS417_04020at 903.016 kb on - strand, within PS417_04020at 903.075 kb on + strand, within PS417_04020at 903.076 kb on - strand, within PS417_04020at 903.171 kb on + strand, within PS417_04020at 903.171 kb on + strand, within PS417_04020at 903.171 kb on + strand, within PS417_04020at 903.172 kb on - strand, within PS417_04020at 903.172 kb on - strand, within PS417_04020at 903.336 kb on + strand, within PS417_04020at 903.336 kb on + strand, within PS417_04020at 903.337 kb on - strand, within PS417_04020at 903.408 kb on + strand, within PS417_04020at 903.448 kb on - strand, within PS417_04020at 903.574 kb on - strand, within PS417_04020at 903.731 kb on + strandat 904.015 kb on - strand, within PS417_04025at 904.015 kb on - strand, within PS417_04025at 904.070 kb on + strand, within PS417_04025at 904.070 kb on + strand, within PS417_04025at 904.071 kb on - strand, within PS417_04025at 904.075 kb on - strandat 904.075 kb on - strand, within PS417_04025at 904.325 kb on + strand, within PS417_04025at 904.326 kb on - strand, within PS417_04025at 904.593 kb on + strandat 904.606 kb on + strandat 904.651 kb on + strandat 904.658 kb on + strandat 904.658 kb on + strandat 904.684 kb on + strandat 904.735 kb on + strandat 904.735 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 1100 mM
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902,814 + -1.4
903,015 + PS417_04020 0.23 -1.4
903,015 + PS417_04020 0.23 -0.3
903,016 - PS417_04020 0.23 -2.7
903,075 + PS417_04020 0.29 -1.7
903,076 - PS417_04020 0.29 -1.4
903,171 + PS417_04020 0.40 -1.6
903,171 + PS417_04020 0.40 -1.0
903,171 + PS417_04020 0.40 -1.7
903,172 - PS417_04020 0.40 -2.7
903,172 - PS417_04020 0.40 -0.9
903,336 + PS417_04020 0.58 -1.5
903,336 + PS417_04020 0.58 -2.3
903,337 - PS417_04020 0.58 +1.5
903,408 + PS417_04020 0.66 -1.1
903,448 - PS417_04020 0.71 -0.9
903,574 - PS417_04020 0.85 -1.4
903,731 + -1.2
904,015 - PS417_04025 0.40 -0.5
904,015 - PS417_04025 0.40 -2.7
904,070 + PS417_04025 0.47 -1.6
904,070 + PS417_04025 0.47 -0.7
904,071 - PS417_04025 0.48 -1.2
904,075 - -0.7
904,075 - PS417_04025 0.48 -1.6
904,325 + PS417_04025 0.83 -2.0
904,326 - PS417_04025 0.83 -1.2
904,593 + -1.8
904,606 + -1.1
904,651 + -0.9
904,658 + -1.5
904,658 + -1.5
904,684 + +0.4
904,735 + +0.4
904,735 + -0.4

Or see this region's nucleotide sequence