Strain Fitness in Pseudomonas simiae WCS417 around PS417_03225

Experiment: LB_noSalt with Chloride 1100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03215 and PS417_03220 are separated by 184 nucleotidesPS417_03220 and PS417_03225 are separated by 35 nucleotidesPS417_03225 and PS417_03230 are separated by 12 nucleotidesPS417_03230 and PS417_03235 are separated by 87 nucleotides PS417_03215: PS417_03215 - 8-oxoguanine deaminase, at 734,907 to 736,262 _03215 PS417_03220: PS417_03220 - short-chain dehydrogenase, at 736,447 to 737,133 _03220 PS417_03225: PS417_03225 - thymidylate synthase, at 737,169 to 737,750 _03225 PS417_03230: PS417_03230 - TetR family transcriptional regulator, at 737,763 to 738,422 _03230 PS417_03235: PS417_03235 - xanthine permease XanP, at 738,510 to 739,904 _03235 Position (kb) 737 738Strain fitness (log2 ratio) -2 -1 0 1at 736.358 kb on + strandat 736.358 kb on + strandat 736.358 kb on + strandat 736.358 kb on + strandat 736.364 kb on + strandat 736.364 kb on + strandat 736.364 kb on + strandat 736.381 kb on + strandat 736.381 kb on + strandat 736.382 kb on - strandat 736.388 kb on - strandat 736.432 kb on - strandat 736.448 kb on + strandat 736.505 kb on + strandat 736.506 kb on - strandat 736.685 kb on + strand, within PS417_03220at 736.686 kb on - strandat 737.179 kb on - strandat 737.231 kb on + strand, within PS417_03225at 737.231 kb on + strand, within PS417_03225at 737.232 kb on - strand, within PS417_03225at 737.232 kb on - strand, within PS417_03225at 737.232 kb on - strand, within PS417_03225at 737.232 kb on - strandat 737.412 kb on - strand, within PS417_03225at 737.412 kb on - strand, within PS417_03225at 737.530 kb on - strand, within PS417_03225at 737.688 kb on - strand, within PS417_03225at 737.688 kb on - strand, within PS417_03225at 737.706 kb on + strandat 737.750 kb on + strandat 737.751 kb on - strandat 737.813 kb on + strandat 737.893 kb on + strand, within PS417_03230at 738.197 kb on + strand, within PS417_03230at 738.197 kb on + strand, within PS417_03230at 738.198 kb on - strand, within PS417_03230at 738.212 kb on + strand, within PS417_03230at 738.212 kb on + strand, within PS417_03230at 738.214 kb on + strand, within PS417_03230at 738.214 kb on + strand, within PS417_03230at 738.214 kb on + strand, within PS417_03230at 738.215 kb on - strand, within PS417_03230at 738.238 kb on + strand, within PS417_03230at 738.239 kb on - strandat 738.239 kb on - strand, within PS417_03230at 738.241 kb on + strand, within PS417_03230at 738.241 kb on + strand, within PS417_03230at 738.241 kb on + strand, within PS417_03230at 738.241 kb on + strand, within PS417_03230at 738.241 kb on + strand, within PS417_03230at 738.242 kb on - strand, within PS417_03230at 738.242 kb on - strand, within PS417_03230at 738.463 kb on + strandat 738.502 kb on + strandat 738.582 kb on + strandat 738.659 kb on + strand, within PS417_03235

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 1100 mM
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736,358 + -0.7
736,358 + -0.4
736,358 + -0.4
736,358 + +0.1
736,364 + -0.1
736,364 + +0.3
736,364 + +0.6
736,381 + -0.8
736,381 + +0.5
736,382 - -0.4
736,388 - +0.1
736,432 - +0.6
736,448 + -0.2
736,505 + -0.6
736,506 - +0.1
736,685 + PS417_03220 0.35 -0.3
736,686 - +0.3
737,179 - -1.3
737,231 + PS417_03225 0.11 +0.1
737,231 + PS417_03225 0.11 -0.1
737,232 - PS417_03225 0.11 +0.2
737,232 - PS417_03225 0.11 +0.5
737,232 - PS417_03225 0.11 +0.5
737,232 - -0.2
737,412 - PS417_03225 0.42 -2.2
737,412 - PS417_03225 0.42 +1.7
737,530 - PS417_03225 0.62 +0.6
737,688 - PS417_03225 0.89 +0.9
737,688 - PS417_03225 0.89 +0.6
737,706 + +0.0
737,750 + +0.3
737,751 - +0.7
737,813 + -0.8
737,893 + PS417_03230 0.20 +1.1
738,197 + PS417_03230 0.66 +0.2
738,197 + PS417_03230 0.66 +0.1
738,198 - PS417_03230 0.66 +0.0
738,212 + PS417_03230 0.68 +0.6
738,212 + PS417_03230 0.68 -1.1
738,214 + PS417_03230 0.68 +0.1
738,214 + PS417_03230 0.68 +0.1
738,214 + PS417_03230 0.68 +0.9
738,215 - PS417_03230 0.68 +0.9
738,238 + PS417_03230 0.72 +1.0
738,239 - -0.1
738,239 - PS417_03230 0.72 -0.1
738,241 + PS417_03230 0.72 -1.0
738,241 + PS417_03230 0.72 -0.5
738,241 + PS417_03230 0.72 +0.4
738,241 + PS417_03230 0.72 +0.3
738,241 + PS417_03230 0.72 +0.1
738,242 - PS417_03230 0.73 -0.4
738,242 - PS417_03230 0.73 +0.1
738,463 + +0.2
738,502 + +0.0
738,582 + +0.3
738,659 + PS417_03235 0.11 -0.5

Or see this region's nucleotide sequence