Strain Fitness in Pseudomonas simiae WCS417 around PS417_03145

Experiment: LB_noSalt with Chloride 1100 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_03140 and PS417_03145 are separated by 114 nucleotidesPS417_03145 and PS417_03150 are separated by 124 nucleotides PS417_03140: PS417_03140 - 3-ketoacyl-ACP reductase, at 720,409 to 721,752 _03140 PS417_03145: PS417_03145 - acetyl-CoA acetyltransferase, at 721,867 to 723,144 _03145 PS417_03150: PS417_03150 - kinase, at 723,269 to 724,165 _03150 Position (kb) 721 722 723 724Strain fitness (log2 ratio) -3 -2 -1 0 1at 721.194 kb on + strand, within PS417_03140at 721.196 kb on + strand, within PS417_03140at 721.196 kb on + strand, within PS417_03140at 721.196 kb on + strand, within PS417_03140at 721.197 kb on - strand, within PS417_03140at 721.197 kb on - strand, within PS417_03140at 721.197 kb on - strand, within PS417_03140at 721.547 kb on + strand, within PS417_03140at 721.553 kb on + strand, within PS417_03140at 721.553 kb on + strand, within PS417_03140at 721.554 kb on - strand, within PS417_03140at 721.738 kb on - strandat 721.739 kb on + strandat 721.739 kb on + strandat 721.887 kb on - strandat 721.997 kb on - strand, within PS417_03145at 722.673 kb on - strand, within PS417_03145at 722.851 kb on + strand, within PS417_03145at 722.985 kb on + strand, within PS417_03145at 723.037 kb on - strandat 723.037 kb on - strandat 723.037 kb on - strandat 723.153 kb on + strandat 723.168 kb on + strandat 723.216 kb on + strandat 723.217 kb on - strandat 723.217 kb on - strandat 723.231 kb on - strandat 723.237 kb on - strandat 723.247 kb on - strandat 723.280 kb on + strandat 723.280 kb on + strandat 723.281 kb on - strandat 723.362 kb on + strand, within PS417_03150at 723.362 kb on + strand, within PS417_03150at 723.362 kb on + strand, within PS417_03150at 723.362 kb on + strand, within PS417_03150at 723.362 kb on + strand, within PS417_03150at 723.363 kb on - strand, within PS417_03150at 723.621 kb on + strand, within PS417_03150at 723.621 kb on + strand, within PS417_03150at 723.685 kb on - strand, within PS417_03150at 723.838 kb on - strand, within PS417_03150at 723.903 kb on - strand, within PS417_03150at 723.966 kb on - strand, within PS417_03150at 723.997 kb on - strand, within PS417_03150at 723.997 kb on - strand, within PS417_03150

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 1100 mM
remove
721,194 + PS417_03140 0.58 -0.3
721,196 + PS417_03140 0.59 -0.4
721,196 + PS417_03140 0.59 -0.1
721,196 + PS417_03140 0.59 -0.1
721,197 - PS417_03140 0.59 -1.4
721,197 - PS417_03140 0.59 +0.4
721,197 - PS417_03140 0.59 -0.1
721,547 + PS417_03140 0.85 +1.3
721,553 + PS417_03140 0.85 -0.7
721,553 + PS417_03140 0.85 -0.7
721,554 - PS417_03140 0.85 -0.3
721,738 - +1.3
721,739 + -2.9
721,739 + +0.0
721,887 - -0.8
721,997 - PS417_03145 0.10 +1.6
722,673 - PS417_03145 0.63 -1.0
722,851 + PS417_03145 0.77 -0.8
722,985 + PS417_03145 0.87 +0.3
723,037 - +0.4
723,037 - -0.0
723,037 - +0.1
723,153 + +0.7
723,168 + -0.3
723,216 + -0.6
723,217 - +0.2
723,217 - -0.1
723,231 - +0.1
723,237 - -0.5
723,247 - -1.2
723,280 + +0.2
723,280 + -0.0
723,281 - -0.3
723,362 + PS417_03150 0.10 -0.3
723,362 + PS417_03150 0.10 +0.2
723,362 + PS417_03150 0.10 -0.1
723,362 + PS417_03150 0.10 -0.3
723,362 + PS417_03150 0.10 -0.8
723,363 - PS417_03150 0.10 -0.2
723,621 + PS417_03150 0.39 +0.7
723,621 + PS417_03150 0.39 -0.5
723,685 - PS417_03150 0.46 +0.1
723,838 - PS417_03150 0.63 -0.3
723,903 - PS417_03150 0.71 +0.2
723,966 - PS417_03150 0.78 +1.0
723,997 - PS417_03150 0.81 -1.6
723,997 - PS417_03150 0.81 -0.0

Or see this region's nucleotide sequence