Experiment: LB_noSalt with Chloride 1100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27210 and PS417_27215 are separated by 127 nucleotides PS417_27215 and PS417_27220 are separated by 84 nucleotides PS417_27220 and PS417_27225 are separated by 77 nucleotides
PS417_27210: PS417_27210 - AsnC family transcriptional regulator, at 5,875,270 to 5,875,740
_27210
PS417_27215: PS417_27215 - hypothetical protein, at 5,875,868 to 5,876,206
_27215
PS417_27220: PS417_27220 - type II secretion system protein E, at 5,876,291 to 5,877,970
_27220
PS417_27225: PS417_27225 - protease, at 5,878,048 to 5,878,968
_27225
Position (kb) 5876
5877
5878 Strain fitness (log2 ratio) -2
-1
0
1 at 5875.382 kb on + strand, within PS417_27210 at 5875.382 kb on + strand, within PS417_27210 at 5875.383 kb on - strand, within PS417_27210 at 5875.383 kb on - strand, within PS417_27210 at 5875.442 kb on + strand, within PS417_27210 at 5875.442 kb on + strand, within PS417_27210 at 5875.442 kb on + strand at 5875.442 kb on + strand, within PS417_27210 at 5875.443 kb on - strand, within PS417_27210 at 5875.443 kb on - strand, within PS417_27210 at 5875.742 kb on + strand at 5875.808 kb on - strand at 5875.889 kb on + strand at 5875.998 kb on - strand, within PS417_27215 at 5876.152 kb on + strand, within PS417_27215 at 5876.153 kb on - strand, within PS417_27215 at 5876.153 kb on - strand, within PS417_27215 at 5876.217 kb on + strand at 5876.217 kb on + strand at 5876.218 kb on - strand at 5876.218 kb on - strand at 5876.251 kb on - strand at 5876.262 kb on + strand at 5876.489 kb on + strand, within PS417_27220 at 5876.489 kb on + strand, within PS417_27220 at 5876.490 kb on - strand, within PS417_27220 at 5876.705 kb on - strand, within PS417_27220 at 5876.941 kb on + strand, within PS417_27220 at 5876.967 kb on - strand, within PS417_27220 at 5876.997 kb on + strand, within PS417_27220 at 5877.103 kb on - strand, within PS417_27220 at 5877.300 kb on - strand, within PS417_27220 at 5877.300 kb on - strand, within PS417_27220 at 5877.553 kb on + strand, within PS417_27220 at 5877.553 kb on + strand, within PS417_27220 at 5877.554 kb on - strand, within PS417_27220 at 5877.608 kb on + strand, within PS417_27220 at 5877.609 kb on - strand, within PS417_27220 at 5877.817 kb on - strand at 5877.850 kb on + strand at 5877.850 kb on + strand at 5877.850 kb on + strand at 5877.851 kb on - strand at 5877.851 kb on - strand at 5877.915 kb on + strand at 5877.919 kb on - strand at 5877.998 kb on + strand at 5877.998 kb on + strand at 5877.999 kb on - strand at 5878.036 kb on + strand at 5878.065 kb on - strand at 5878.065 kb on - strand at 5878.101 kb on - strand at 5878.101 kb on - strand at 5878.101 kb on - strand at 5878.101 kb on - strand at 5878.481 kb on + strand, within PS417_27225 at 5878.481 kb on + strand, within PS417_27225 at 5878.482 kb on - strand, within PS417_27225 at 5878.811 kb on - strand, within PS417_27225 at 5878.828 kb on + strand, within PS417_27225 at 5878.828 kb on + strand, within PS417_27225
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 1100 mM remove 5,875,382 + PS417_27210 0.24 +0.2 5,875,382 + PS417_27210 0.24 +0.7 5,875,383 - PS417_27210 0.24 +0.3 5,875,383 - PS417_27210 0.24 +0.3 5,875,442 + PS417_27210 0.37 +0.1 5,875,442 + PS417_27210 0.37 -0.4 5,875,442 + -1.1 5,875,442 + PS417_27210 0.37 -1.1 5,875,443 - PS417_27210 0.37 -1.8 5,875,443 - PS417_27210 0.37 +1.5 5,875,742 + -0.8 5,875,808 - -0.2 5,875,889 + +0.2 5,875,998 - PS417_27215 0.38 -0.6 5,876,152 + PS417_27215 0.84 +0.1 5,876,153 - PS417_27215 0.84 -0.4 5,876,153 - PS417_27215 0.84 -0.2 5,876,217 + +0.2 5,876,217 + +0.6 5,876,218 - -0.4 5,876,218 - -0.3 5,876,251 - -0.3 5,876,262 + +0.3 5,876,489 + PS417_27220 0.12 +1.0 5,876,489 + PS417_27220 0.12 +0.2 5,876,490 - PS417_27220 0.12 +1.4 5,876,705 - PS417_27220 0.25 -2.1 5,876,941 + PS417_27220 0.39 +0.4 5,876,967 - PS417_27220 0.40 +0.0 5,876,997 + PS417_27220 0.42 -0.1 5,877,103 - PS417_27220 0.48 +0.1 5,877,300 - PS417_27220 0.60 +0.3 5,877,300 - PS417_27220 0.60 +0.9 5,877,553 + PS417_27220 0.75 +0.8 5,877,553 + PS417_27220 0.75 -0.1 5,877,554 - PS417_27220 0.75 +0.2 5,877,608 + PS417_27220 0.78 +0.1 5,877,609 - PS417_27220 0.78 +0.3 5,877,817 - +0.3 5,877,850 + -1.5 5,877,850 + +0.6 5,877,850 + +0.0 5,877,851 - +0.0 5,877,851 - -0.1 5,877,915 + -0.1 5,877,919 - +0.3 5,877,998 + -0.8 5,877,998 + -0.1 5,877,999 - +0.1 5,878,036 + -0.3 5,878,065 - +0.3 5,878,065 - -0.1 5,878,101 - +0.2 5,878,101 - +0.6 5,878,101 - -0.3 5,878,101 - +0.3 5,878,481 + PS417_27225 0.47 -0.5 5,878,481 + PS417_27225 0.47 -0.3 5,878,482 - PS417_27225 0.47 +0.5 5,878,811 - PS417_27225 0.83 +0.1 5,878,828 + PS417_27225 0.85 -0.2 5,878,828 + PS417_27225 0.85 +0.4
Or see this region's nucleotide sequence