Strain Fitness in Pseudomonas simiae WCS417 around PS417_24045

Experiment: LB_noSalt with Chloride 1100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24040 and PS417_24045 are separated by 105 nucleotidesPS417_24045 and PS417_24050 are separated by 259 nucleotides PS417_24040: PS417_24040 - carbamoyl phosphate synthase large subunit, at 5,202,937 to 5,206,158 _24040 PS417_24045: PS417_24045 - carbamoyl phosphate synthase small subunit, at 5,206,264 to 5,207,400 _24045 PS417_24050: PS417_24050 - dihydrodipicolinate reductase, at 5,207,660 to 5,208,466 _24050 Position (kb) 5206 5207 5208Strain fitness (log2 ratio) -2 -1 0 1at 5206.138 kb on + strandat 5207.418 kb on - strandat 5207.446 kb on - strandat 5207.625 kb on + strandat 5207.625 kb on + strandat 5207.626 kb on - strandat 5207.631 kb on + strandat 5207.650 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 1100 mM
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5,206,138 + +0.6
5,207,418 - -0.3
5,207,446 - -0.6
5,207,625 + +0.8
5,207,625 + -2.4
5,207,626 - +0.1
5,207,631 + -1.1
5,207,650 + -1.0

Or see this region's nucleotide sequence