Strain Fitness in Pseudomonas simiae WCS417 around PS417_22635

Experiment: LB_noSalt with Chloride 1100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22630 and PS417_22635 are separated by 216 nucleotidesPS417_22635 and PS417_22640 are separated by 91 nucleotides PS417_22630: PS417_22630 - hypothetical protein, at 4,899,686 to 4,900,618 _22630 PS417_22635: PS417_22635 - fumarate hydratase, at 4,900,835 to 4,902,358 _22635 PS417_22640: PS417_22640 - cytochrome C biogenesis protein CcmE, at 4,902,450 to 4,904,216 _22640 Position (kb) 4900 4901 4902 4903Strain fitness (log2 ratio) -1 0 1 2 3at 4899.919 kb on - strand, within PS417_22630at 4900.068 kb on + strand, within PS417_22630at 4900.525 kb on - strandat 4900.618 kb on + strandat 4900.618 kb on + strandat 4900.619 kb on - strandat 4900.620 kb on + strandat 4900.621 kb on - strandat 4900.621 kb on - strandat 4900.621 kb on - strandat 4900.621 kb on - strandat 4900.621 kb on - strandat 4900.621 kb on - strandat 4900.621 kb on - strandat 4900.621 kb on - strandat 4900.679 kb on - strandat 4900.679 kb on - strandat 4900.726 kb on + strandat 4900.819 kb on + strandat 4900.819 kb on + strandat 4900.820 kb on - strandat 4902.356 kb on + strandat 4902.356 kb on + strandat 4902.357 kb on - strandat 4902.357 kb on - strandat 4902.413 kb on + strandat 4902.413 kb on + strandat 4902.413 kb on + strandat 4902.414 kb on - strandat 4902.449 kb on + strandat 4902.450 kb on - strandat 4902.457 kb on + strandat 4902.562 kb on + strandat 4902.600 kb on + strandat 4902.600 kb on + strandat 4902.832 kb on - strand, within PS417_22640at 4902.862 kb on - strand, within PS417_22640at 4902.933 kb on + strand, within PS417_22640at 4903.162 kb on - strand, within PS417_22640at 4903.264 kb on - strand, within PS417_22640

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 1100 mM
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4,899,919 - PS417_22630 0.25 +0.3
4,900,068 + PS417_22630 0.41 +1.5
4,900,525 - -0.1
4,900,618 + +3.0
4,900,618 + +0.0
4,900,619 - -0.8
4,900,620 + -0.5
4,900,621 - +0.2
4,900,621 - -0.3
4,900,621 - +1.1
4,900,621 - +0.1
4,900,621 - -0.8
4,900,621 - -0.1
4,900,621 - -0.3
4,900,621 - +0.1
4,900,679 - +1.5
4,900,679 - -0.2
4,900,726 + +1.1
4,900,819 + +0.5
4,900,819 + -0.8
4,900,820 - +0.3
4,902,356 + +0.4
4,902,356 + -0.9
4,902,357 - +0.7
4,902,357 - -0.1
4,902,413 + -1.0
4,902,413 + -0.2
4,902,413 + -0.2
4,902,414 - -0.3
4,902,449 + -0.0
4,902,450 - +0.6
4,902,457 + +0.4
4,902,562 + -0.0
4,902,600 + -0.3
4,902,600 + +0.2
4,902,832 - PS417_22640 0.22 +0.1
4,902,862 - PS417_22640 0.23 +0.2
4,902,933 + PS417_22640 0.27 -0.2
4,903,162 - PS417_22640 0.40 +0.7
4,903,264 - PS417_22640 0.46 -0.5

Or see this region's nucleotide sequence