Experiment: LB_noSalt with Chloride 1100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01430 and PS417_01435 overlap by 4 nucleotides PS417_01435 and PS417_01440 overlap by 11 nucleotides PS417_01440 and PS417_01445 are separated by 289 nucleotides PS417_01445 and PS417_01450 overlap by 4 nucleotides
PS417_01430: PS417_01430 - chromosome segregation protein SMC, at 317,402 to 319,762
_01430
PS417_01435: PS417_01435 - hypothetical protein, at 319,759 to 320,478
_01435
PS417_01440: PS417_01440 - hypothetical protein, at 320,468 to 321,907
_01440
PS417_01445: PS417_01445 - hypothetical protein, at 322,197 to 322,472
_01445
PS417_01450: PS417_01450 - integrase, at 322,469 to 323,449
_01450
Position (kb) 320
321
322 Strain fitness (log2 ratio) -2
-1
0
1
2 at 319.475 kb on + strand, within PS417_01430 at 319.555 kb on + strand at 319.555 kb on + strand at 319.556 kb on - strand at 319.844 kb on + strand, within PS417_01435 at 320.902 kb on - strand, within PS417_01440 at 321.033 kb on + strand, within PS417_01440 at 321.503 kb on + strand, within PS417_01440 at 321.546 kb on - strand, within PS417_01440 at 321.687 kb on + strand, within PS417_01440 at 321.688 kb on - strand, within PS417_01440 at 321.737 kb on - strand, within PS417_01440 at 321.793 kb on - strand at 321.872 kb on - strand at 321.930 kb on - strand at 321.930 kb on - strand at 321.947 kb on - strand at 322.000 kb on + strand at 322.003 kb on + strand at 322.004 kb on - strand at 322.004 kb on - strand at 322.258 kb on + strand, within PS417_01445 at 322.258 kb on + strand, within PS417_01445 at 322.258 kb on + strand, within PS417_01445 at 322.258 kb on + strand, within PS417_01445 at 322.259 kb on - strand, within PS417_01445 at 322.259 kb on - strand, within PS417_01445 at 322.262 kb on - strand, within PS417_01445 at 322.264 kb on + strand, within PS417_01445 at 322.265 kb on - strand, within PS417_01445 at 322.265 kb on - strand, within PS417_01445 at 322.265 kb on - strand, within PS417_01445 at 322.344 kb on - strand, within PS417_01445 at 322.347 kb on + strand, within PS417_01445 at 322.347 kb on + strand, within PS417_01445 at 322.395 kb on + strand, within PS417_01445 at 322.395 kb on + strand, within PS417_01445 at 322.396 kb on - strand, within PS417_01445 at 322.396 kb on - strand, within PS417_01445 at 322.396 kb on - strand, within PS417_01445 at 322.396 kb on - strand, within PS417_01445 at 322.488 kb on + strand at 322.488 kb on + strand at 322.552 kb on + strand at 322.552 kb on + strand at 322.552 kb on + strand at 322.553 kb on - strand at 322.553 kb on - strand at 322.638 kb on + strand, within PS417_01450 at 322.639 kb on - strand, within PS417_01450 at 322.639 kb on - strand, within PS417_01450 at 322.639 kb on - strand, within PS417_01450 at 322.678 kb on + strand, within PS417_01450 at 322.760 kb on - strand, within PS417_01450 at 322.804 kb on + strand, within PS417_01450 at 322.805 kb on - strand, within PS417_01450 at 322.805 kb on - strand, within PS417_01450 at 322.805 kb on - strand, within PS417_01450 at 322.805 kb on - strand, within PS417_01450
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 1100 mM remove 319,475 + PS417_01430 0.88 +0.2 319,555 + +1.0 319,555 + +1.4 319,556 - +0.9 319,844 + PS417_01435 0.12 +0.6 320,902 - PS417_01440 0.30 +0.7 321,033 + PS417_01440 0.39 +0.3 321,503 + PS417_01440 0.72 +0.9 321,546 - PS417_01440 0.75 -0.3 321,687 + PS417_01440 0.85 +1.0 321,688 - PS417_01440 0.85 +1.1 321,737 - PS417_01440 0.88 +0.6 321,793 - -0.1 321,872 - +0.7 321,930 - +0.1 321,930 - +0.2 321,947 - +0.5 322,000 + +0.9 322,003 + +0.8 322,004 - -0.0 322,004 - -0.4 322,258 + PS417_01445 0.22 +0.4 322,258 + PS417_01445 0.22 -0.3 322,258 + PS417_01445 0.22 +1.7 322,258 + PS417_01445 0.22 +1.1 322,259 - PS417_01445 0.22 +0.9 322,259 - PS417_01445 0.22 +0.3 322,262 - PS417_01445 0.24 +0.4 322,264 + PS417_01445 0.24 +0.1 322,265 - PS417_01445 0.25 +0.4 322,265 - PS417_01445 0.25 +0.5 322,265 - PS417_01445 0.25 +0.7 322,344 - PS417_01445 0.53 +0.7 322,347 + PS417_01445 0.54 +0.4 322,347 + PS417_01445 0.54 +1.2 322,395 + PS417_01445 0.72 +0.5 322,395 + PS417_01445 0.72 +0.2 322,396 - PS417_01445 0.72 +0.7 322,396 - PS417_01445 0.72 +0.5 322,396 - PS417_01445 0.72 +0.2 322,396 - PS417_01445 0.72 +0.2 322,488 + -0.5 322,488 + +1.3 322,552 + -0.1 322,552 + +0.4 322,552 + -0.3 322,553 - +0.9 322,553 - +0.5 322,638 + PS417_01450 0.17 +1.0 322,639 - PS417_01450 0.17 -0.3 322,639 - PS417_01450 0.17 +2.0 322,639 - PS417_01450 0.17 +0.1 322,678 + PS417_01450 0.21 -2.1 322,760 - PS417_01450 0.30 +0.3 322,804 + PS417_01450 0.34 +0.6 322,805 - PS417_01450 0.34 +0.2 322,805 - PS417_01450 0.34 +0.2 322,805 - PS417_01450 0.34 +0.0 322,805 - PS417_01450 0.34 +0.2
Or see this region's nucleotide sequence