Strain Fitness in Pseudomonas simiae WCS417 around PS417_01440

Experiment: LB_noSalt with Chloride 1100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01430 and PS417_01435 overlap by 4 nucleotidesPS417_01435 and PS417_01440 overlap by 11 nucleotidesPS417_01440 and PS417_01445 are separated by 289 nucleotidesPS417_01445 and PS417_01450 overlap by 4 nucleotides PS417_01430: PS417_01430 - chromosome segregation protein SMC, at 317,402 to 319,762 _01430 PS417_01435: PS417_01435 - hypothetical protein, at 319,759 to 320,478 _01435 PS417_01440: PS417_01440 - hypothetical protein, at 320,468 to 321,907 _01440 PS417_01445: PS417_01445 - hypothetical protein, at 322,197 to 322,472 _01445 PS417_01450: PS417_01450 - integrase, at 322,469 to 323,449 _01450 Position (kb) 320 321 322Strain fitness (log2 ratio) -2 -1 0 1 2at 319.475 kb on + strand, within PS417_01430at 319.555 kb on + strandat 319.555 kb on + strandat 319.556 kb on - strandat 319.844 kb on + strand, within PS417_01435at 320.902 kb on - strand, within PS417_01440at 321.033 kb on + strand, within PS417_01440at 321.503 kb on + strand, within PS417_01440at 321.546 kb on - strand, within PS417_01440at 321.687 kb on + strand, within PS417_01440at 321.688 kb on - strand, within PS417_01440at 321.737 kb on - strand, within PS417_01440at 321.793 kb on - strandat 321.872 kb on - strandat 321.930 kb on - strandat 321.930 kb on - strandat 321.947 kb on - strandat 322.000 kb on + strandat 322.003 kb on + strandat 322.004 kb on - strandat 322.004 kb on - strandat 322.258 kb on + strand, within PS417_01445at 322.258 kb on + strand, within PS417_01445at 322.258 kb on + strand, within PS417_01445at 322.258 kb on + strand, within PS417_01445at 322.259 kb on - strand, within PS417_01445at 322.259 kb on - strand, within PS417_01445at 322.262 kb on - strand, within PS417_01445at 322.264 kb on + strand, within PS417_01445at 322.265 kb on - strand, within PS417_01445at 322.265 kb on - strand, within PS417_01445at 322.265 kb on - strand, within PS417_01445at 322.344 kb on - strand, within PS417_01445at 322.347 kb on + strand, within PS417_01445at 322.347 kb on + strand, within PS417_01445at 322.395 kb on + strand, within PS417_01445at 322.395 kb on + strand, within PS417_01445at 322.396 kb on - strand, within PS417_01445at 322.396 kb on - strand, within PS417_01445at 322.396 kb on - strand, within PS417_01445at 322.396 kb on - strand, within PS417_01445at 322.488 kb on + strandat 322.488 kb on + strandat 322.552 kb on + strandat 322.552 kb on + strandat 322.552 kb on + strandat 322.553 kb on - strandat 322.553 kb on - strandat 322.638 kb on + strand, within PS417_01450at 322.639 kb on - strand, within PS417_01450at 322.639 kb on - strand, within PS417_01450at 322.639 kb on - strand, within PS417_01450at 322.678 kb on + strand, within PS417_01450at 322.760 kb on - strand, within PS417_01450at 322.804 kb on + strand, within PS417_01450at 322.805 kb on - strand, within PS417_01450at 322.805 kb on - strand, within PS417_01450at 322.805 kb on - strand, within PS417_01450at 322.805 kb on - strand, within PS417_01450

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 1100 mM
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319,475 + PS417_01430 0.88 +0.2
319,555 + +1.0
319,555 + +1.4
319,556 - +0.9
319,844 + PS417_01435 0.12 +0.6
320,902 - PS417_01440 0.30 +0.7
321,033 + PS417_01440 0.39 +0.3
321,503 + PS417_01440 0.72 +0.9
321,546 - PS417_01440 0.75 -0.3
321,687 + PS417_01440 0.85 +1.0
321,688 - PS417_01440 0.85 +1.1
321,737 - PS417_01440 0.88 +0.6
321,793 - -0.1
321,872 - +0.7
321,930 - +0.1
321,930 - +0.2
321,947 - +0.5
322,000 + +0.9
322,003 + +0.8
322,004 - -0.0
322,004 - -0.4
322,258 + PS417_01445 0.22 +0.4
322,258 + PS417_01445 0.22 -0.3
322,258 + PS417_01445 0.22 +1.7
322,258 + PS417_01445 0.22 +1.1
322,259 - PS417_01445 0.22 +0.9
322,259 - PS417_01445 0.22 +0.3
322,262 - PS417_01445 0.24 +0.4
322,264 + PS417_01445 0.24 +0.1
322,265 - PS417_01445 0.25 +0.4
322,265 - PS417_01445 0.25 +0.5
322,265 - PS417_01445 0.25 +0.7
322,344 - PS417_01445 0.53 +0.7
322,347 + PS417_01445 0.54 +0.4
322,347 + PS417_01445 0.54 +1.2
322,395 + PS417_01445 0.72 +0.5
322,395 + PS417_01445 0.72 +0.2
322,396 - PS417_01445 0.72 +0.7
322,396 - PS417_01445 0.72 +0.5
322,396 - PS417_01445 0.72 +0.2
322,396 - PS417_01445 0.72 +0.2
322,488 + -0.5
322,488 + +1.3
322,552 + -0.1
322,552 + +0.4
322,552 + -0.3
322,553 - +0.9
322,553 - +0.5
322,638 + PS417_01450 0.17 +1.0
322,639 - PS417_01450 0.17 -0.3
322,639 - PS417_01450 0.17 +2.0
322,639 - PS417_01450 0.17 +0.1
322,678 + PS417_01450 0.21 -2.1
322,760 - PS417_01450 0.30 +0.3
322,804 + PS417_01450 0.34 +0.6
322,805 - PS417_01450 0.34 +0.2
322,805 - PS417_01450 0.34 +0.2
322,805 - PS417_01450 0.34 +0.0
322,805 - PS417_01450 0.34 +0.2

Or see this region's nucleotide sequence