Strain Fitness in Pseudomonas simiae WCS417 around PS417_13910

Experiment: LB_noSalt with Chloride 1100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13905 and PS417_13910 are separated by 240 nucleotidesPS417_13910 and PS417_13915 are separated by 162 nucleotides PS417_13905: PS417_13905 - chemotaxis protein CheY, at 3,054,371 to 3,057,874 _13905 PS417_13910: PS417_13910 - response regulator, at 3,058,115 to 3,058,471 _13910 PS417_13915: PS417_13915 - cell envelope protein, at 3,058,634 to 3,060,034 _13915 Position (kb) 3058 3059Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3057.160 kb on + strand, within PS417_13905at 3057.194 kb on + strand, within PS417_13905at 3057.304 kb on - strand, within PS417_13905at 3057.391 kb on - strand, within PS417_13905at 3057.473 kb on - strand, within PS417_13905at 3057.615 kb on + strandat 3057.615 kb on + strandat 3057.757 kb on - strandat 3057.757 kb on - strandat 3057.757 kb on - strandat 3057.757 kb on - strandat 3057.967 kb on - strandat 3058.036 kb on + strandat 3058.037 kb on - strandat 3058.037 kb on - strandat 3058.048 kb on + strandat 3058.083 kb on + strandat 3058.114 kb on + strandat 3058.114 kb on + strandat 3058.114 kb on + strandat 3058.114 kb on + strandat 3058.114 kb on + strandat 3058.114 kb on + strandat 3058.115 kb on - strandat 3058.115 kb on - strandat 3058.115 kb on - strandat 3058.266 kb on + strandat 3058.470 kb on - strandat 3058.534 kb on + strandat 3058.558 kb on + strandat 3058.599 kb on - strandat 3058.599 kb on - strandat 3058.627 kb on + strandat 3058.628 kb on - strandat 3058.628 kb on - strandat 3058.751 kb on + strandat 3058.751 kb on + strandat 3058.751 kb on + strandat 3058.755 kb on + strandat 3058.755 kb on + strandat 3058.755 kb on + strandat 3058.755 kb on + strandat 3058.755 kb on + strandat 3058.755 kb on + strandat 3058.756 kb on - strandat 3058.756 kb on - strandat 3058.756 kb on - strandat 3058.756 kb on - strandat 3058.757 kb on + strandat 3058.758 kb on - strandat 3058.793 kb on + strand, within PS417_13915at 3058.916 kb on + strand, within PS417_13915at 3059.015 kb on + strand, within PS417_13915at 3059.072 kb on + strand, within PS417_13915at 3059.073 kb on - strand, within PS417_13915at 3059.132 kb on + strand, within PS417_13915at 3059.132 kb on + strand, within PS417_13915at 3059.153 kb on + strand, within PS417_13915at 3059.153 kb on + strand, within PS417_13915at 3059.154 kb on - strand, within PS417_13915at 3059.223 kb on - strand, within PS417_13915at 3059.223 kb on - strand, within PS417_13915at 3059.279 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 1100 mM
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3,057,160 + PS417_13905 0.80 -1.5
3,057,194 + PS417_13905 0.81 -0.4
3,057,304 - PS417_13905 0.84 -3.4
3,057,391 - PS417_13905 0.86 -2.8
3,057,473 - PS417_13905 0.89 +0.2
3,057,615 + -2.0
3,057,615 + -2.4
3,057,757 - -1.9
3,057,757 - -0.7
3,057,757 - -0.8
3,057,757 - +0.3
3,057,967 - +0.2
3,058,036 + -0.7
3,058,037 - -1.1
3,058,037 - -1.0
3,058,048 + -0.7
3,058,083 + -0.7
3,058,114 + -1.6
3,058,114 + -1.1
3,058,114 + -2.4
3,058,114 + -1.0
3,058,114 + -2.3
3,058,114 + -0.2
3,058,115 - -1.0
3,058,115 - -4.1
3,058,115 - -0.9
3,058,266 + -0.7
3,058,470 - -0.1
3,058,534 + -0.1
3,058,558 + -0.3
3,058,599 - +0.6
3,058,599 - +0.2
3,058,627 + -1.2
3,058,628 - +0.6
3,058,628 - +0.9
3,058,751 + +0.3
3,058,751 + -1.7
3,058,751 + -0.1
3,058,755 + +0.3
3,058,755 + +0.5
3,058,755 + -0.0
3,058,755 + -0.2
3,058,755 + -0.5
3,058,755 + -0.7
3,058,756 - -0.3
3,058,756 - +0.4
3,058,756 - -0.4
3,058,756 - +0.3
3,058,757 + +3.4
3,058,758 - -0.5
3,058,793 + PS417_13915 0.11 -0.2
3,058,916 + PS417_13915 0.20 +0.2
3,059,015 + PS417_13915 0.27 +0.2
3,059,072 + PS417_13915 0.31 +0.2
3,059,073 - PS417_13915 0.31 -2.1
3,059,132 + PS417_13915 0.36 +0.8
3,059,132 + PS417_13915 0.36 +0.5
3,059,153 + PS417_13915 0.37 -1.0
3,059,153 + PS417_13915 0.37 -0.2
3,059,154 - PS417_13915 0.37 -0.6
3,059,223 - PS417_13915 0.42 +1.2
3,059,223 - PS417_13915 0.42 -0.5
3,059,279 - +1.9

Or see this region's nucleotide sequence