Strain Fitness in Pseudomonas simiae WCS417 around PS417_08885

Experiment: LB_noSalt with Chloride 1100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08875 and PS417_08880 overlap by 7 nucleotidesPS417_08880 and PS417_08885 are separated by 3 nucleotidesPS417_08885 and PS417_08890 are separated by 11 nucleotidesPS417_08890 and PS417_08895 are separated by 262 nucleotides PS417_08875: PS417_08875 - succinate dehydrogenase, at 1,931,154 to 1,931,528 _08875 PS417_08880: PS417_08880 - succinate dehydrogenase, at 1,931,522 to 1,931,890 _08880 PS417_08885: PS417_08885 - succinate dehydrogenase, at 1,931,894 to 1,933,666 _08885 PS417_08890: PS417_08890 - succinate dehydrogenase, at 1,933,678 to 1,934,382 _08890 PS417_08895: PS417_08895 - 2-oxoglutarate dehydrogenase, at 1,934,645 to 1,937,476 _08895 Position (kb) 1931 1932 1933 1934Strain fitness (log2 ratio) -1 0 1at 1930.969 kb on + strandat 1934.395 kb on + strandat 1934.395 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 1100 mM
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1,930,969 + +0.3
1,934,395 + -0.2
1,934,395 + -0.5

Or see this region's nucleotide sequence