Experiment: LB_noSalt with Chloride 1100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_07575 and PS417_07580 are separated by 29 nucleotides PS417_07580 and PS417_07585 are separated by 97 nucleotides PS417_07585 and PS417_07590 are separated by 114 nucleotides
PS417_07575: PS417_07575 - multifunctional fatty acid oxidation complex subunit alpha, at 1,666,380 to 1,668,527
_07575
PS417_07580: PS417_07580 - 3-ketoacyl-CoA thiolase, at 1,668,557 to 1,669,732
_07580
PS417_07585: PS417_07585 - hypothetical protein, at 1,669,830 to 1,670,066
_07585
PS417_07590: PS417_07590 - DNA topoisomerase I, at 1,670,181 to 1,672,802
_07590
Position (kb)
1668
1669
1670 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1668.147 kb on + strand, within PS417_07575 at 1668.357 kb on + strand at 1668.357 kb on + strand at 1668.358 kb on - strand at 1668.447 kb on + strand at 1668.553 kb on - strand at 1668.556 kb on + strand at 1668.557 kb on - strand at 1669.185 kb on - strand, within PS417_07580 at 1669.731 kb on - strand at 1669.731 kb on - strand at 1669.851 kb on + strand at 1669.860 kb on + strand, within PS417_07585 at 1669.860 kb on + strand, within PS417_07585 at 1669.861 kb on - strand, within PS417_07585 at 1669.861 kb on - strand, within PS417_07585 at 1669.862 kb on + strand, within PS417_07585 at 1669.863 kb on - strand, within PS417_07585 at 1669.929 kb on + strand, within PS417_07585 at 1669.941 kb on + strand, within PS417_07585 at 1669.941 kb on + strand, within PS417_07585 at 1669.942 kb on - strand, within PS417_07585 at 1669.942 kb on - strand, within PS417_07585 at 1670.113 kb on + strand at 1670.113 kb on + strand at 1670.113 kb on + strand at 1670.115 kb on + strand at 1670.115 kb on + strand at 1670.115 kb on + strand at 1670.115 kb on + strand at 1670.115 kb on + strand at 1670.115 kb on + strand at 1670.115 kb on + strand at 1670.115 kb on + strand at 1670.117 kb on + strand at 1670.119 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 1100 mM remove 1,668,147 + PS417_07575 0.82 -0.2 1,668,357 + +0.7 1,668,357 + -0.6 1,668,358 - -0.2 1,668,447 + +0.3 1,668,553 - -1.0 1,668,556 + +0.0 1,668,557 - -3.2 1,669,185 - PS417_07580 0.53 +0.3 1,669,731 - -0.7 1,669,731 - -1.7 1,669,851 + -0.4 1,669,860 + PS417_07585 0.13 +0.2 1,669,860 + PS417_07585 0.13 +1.7 1,669,861 - PS417_07585 0.13 -1.2 1,669,861 - PS417_07585 0.13 -1.4 1,669,862 + PS417_07585 0.14 +0.1 1,669,863 - PS417_07585 0.14 -0.8 1,669,929 + PS417_07585 0.42 -0.0 1,669,941 + PS417_07585 0.47 +0.1 1,669,941 + PS417_07585 0.47 +0.3 1,669,942 - PS417_07585 0.47 -0.3 1,669,942 - PS417_07585 0.47 -0.8 1,670,113 + +0.0 1,670,113 + -0.0 1,670,113 + +0.2 1,670,115 + +0.6 1,670,115 + +0.3 1,670,115 + +0.5 1,670,115 + -0.2 1,670,115 + +0.0 1,670,115 + -1.4 1,670,115 + -2.6 1,670,115 + +0.2 1,670,117 + +0.6 1,670,119 + +0.6
Or see this region's nucleotide sequence