Strain Fitness in Pseudomonas simiae WCS417 around PS417_07580

Experiment: LB_noSalt with Chloride 1100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07575 and PS417_07580 are separated by 29 nucleotidesPS417_07580 and PS417_07585 are separated by 97 nucleotidesPS417_07585 and PS417_07590 are separated by 114 nucleotides PS417_07575: PS417_07575 - multifunctional fatty acid oxidation complex subunit alpha, at 1,666,380 to 1,668,527 _07575 PS417_07580: PS417_07580 - 3-ketoacyl-CoA thiolase, at 1,668,557 to 1,669,732 _07580 PS417_07585: PS417_07585 - hypothetical protein, at 1,669,830 to 1,670,066 _07585 PS417_07590: PS417_07590 - DNA topoisomerase I, at 1,670,181 to 1,672,802 _07590 Position (kb) 1668 1669 1670Strain fitness (log2 ratio) -3 -2 -1 0 1at 1668.147 kb on + strand, within PS417_07575at 1668.357 kb on + strandat 1668.357 kb on + strandat 1668.358 kb on - strandat 1668.447 kb on + strandat 1668.553 kb on - strandat 1668.556 kb on + strandat 1668.557 kb on - strandat 1669.185 kb on - strand, within PS417_07580at 1669.731 kb on - strandat 1669.731 kb on - strandat 1669.851 kb on + strandat 1669.860 kb on + strand, within PS417_07585at 1669.860 kb on + strand, within PS417_07585at 1669.861 kb on - strand, within PS417_07585at 1669.861 kb on - strand, within PS417_07585at 1669.862 kb on + strand, within PS417_07585at 1669.863 kb on - strand, within PS417_07585at 1669.929 kb on + strand, within PS417_07585at 1669.941 kb on + strand, within PS417_07585at 1669.941 kb on + strand, within PS417_07585at 1669.942 kb on - strand, within PS417_07585at 1669.942 kb on - strand, within PS417_07585at 1670.113 kb on + strandat 1670.113 kb on + strandat 1670.113 kb on + strandat 1670.115 kb on + strandat 1670.115 kb on + strandat 1670.115 kb on + strandat 1670.115 kb on + strandat 1670.115 kb on + strandat 1670.115 kb on + strandat 1670.115 kb on + strandat 1670.115 kb on + strandat 1670.117 kb on + strandat 1670.119 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 1100 mM
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1,668,147 + PS417_07575 0.82 -0.2
1,668,357 + +0.7
1,668,357 + -0.6
1,668,358 - -0.2
1,668,447 + +0.3
1,668,553 - -1.0
1,668,556 + +0.0
1,668,557 - -3.2
1,669,185 - PS417_07580 0.53 +0.3
1,669,731 - -0.7
1,669,731 - -1.7
1,669,851 + -0.4
1,669,860 + PS417_07585 0.13 +0.2
1,669,860 + PS417_07585 0.13 +1.7
1,669,861 - PS417_07585 0.13 -1.2
1,669,861 - PS417_07585 0.13 -1.4
1,669,862 + PS417_07585 0.14 +0.1
1,669,863 - PS417_07585 0.14 -0.8
1,669,929 + PS417_07585 0.42 -0.0
1,669,941 + PS417_07585 0.47 +0.1
1,669,941 + PS417_07585 0.47 +0.3
1,669,942 - PS417_07585 0.47 -0.3
1,669,942 - PS417_07585 0.47 -0.8
1,670,113 + +0.0
1,670,113 + -0.0
1,670,113 + +0.2
1,670,115 + +0.6
1,670,115 + +0.3
1,670,115 + +0.5
1,670,115 + -0.2
1,670,115 + +0.0
1,670,115 + -1.4
1,670,115 + -2.6
1,670,115 + +0.2
1,670,117 + +0.6
1,670,119 + +0.6

Or see this region's nucleotide sequence