Strain Fitness in Pseudomonas simiae WCS417 around PS417_01600

Experiment: LB_noSalt with Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01595 and PS417_01600 are separated by 30 nucleotidesPS417_01600 and PS417_01605 are separated by 259 nucleotides PS417_01595: PS417_01595 - peptidase S41, at 350,852 to 352,168 _01595 PS417_01600: PS417_01600 - peptidase M23, at 352,199 to 353,494 _01600 PS417_01605: PS417_01605 - phosphoglycerate mutase, at 353,754 to 355,280 _01605 Position (kb) 352 353 354Strain fitness (log2 ratio) -2 -1 0 1 2 3at 352.184 kb on - strandat 352.188 kb on + strandat 352.189 kb on - strandat 352.189 kb on - strandat 352.189 kb on - strandat 352.189 kb on - strandat 352.189 kb on - strandat 352.255 kb on + strandat 352.325 kb on + strandat 352.381 kb on - strand, within PS417_01600at 353.067 kb on + strand, within PS417_01600at 353.068 kb on - strand, within PS417_01600at 353.074 kb on - strand, within PS417_01600at 353.076 kb on + strand, within PS417_01600at 353.077 kb on - strand, within PS417_01600at 353.077 kb on - strand, within PS417_01600at 353.077 kb on - strand, within PS417_01600at 353.401 kb on + strandat 353.494 kb on + strandat 353.527 kb on + strandat 353.528 kb on - strandat 353.528 kb on - strandat 353.528 kb on - strandat 353.528 kb on - strandat 353.531 kb on - strandat 353.531 kb on - strandat 353.531 kb on - strandat 353.531 kb on - strandat 353.583 kb on + strandat 353.584 kb on - strandat 353.584 kb on - strandat 353.584 kb on - strandat 353.604 kb on - strandat 353.620 kb on + strandat 353.621 kb on - strandat 353.621 kb on - strandat 353.621 kb on - strandat 353.632 kb on + strandat 353.633 kb on - strandat 353.705 kb on + strandat 353.706 kb on - strandat 354.097 kb on + strand, within PS417_01605at 354.098 kb on - strand, within PS417_01605

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 500 mM
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352,184 - -0.8
352,188 + -1.5
352,189 - +0.5
352,189 - +0.0
352,189 - -0.2
352,189 - +0.6
352,189 - -0.9
352,255 + -2.3
352,325 + -1.7
352,381 - PS417_01600 0.14 -2.2
353,067 + PS417_01600 0.67 -0.6
353,068 - PS417_01600 0.67 -1.8
353,074 - PS417_01600 0.68 -2.7
353,076 + PS417_01600 0.68 -1.1
353,077 - PS417_01600 0.68 -1.0
353,077 - PS417_01600 0.68 -2.4
353,077 - PS417_01600 0.68 -0.8
353,401 + -1.1
353,494 + +0.2
353,527 + -0.3
353,528 - +0.2
353,528 - -0.6
353,528 - -0.4
353,528 - -0.4
353,531 - -1.1
353,531 - -0.2
353,531 - +1.6
353,531 - -0.5
353,583 + -0.3
353,584 - +0.6
353,584 - -0.1
353,584 - +0.4
353,604 - -0.2
353,620 + -0.5
353,621 - -0.2
353,621 - +0.2
353,621 - -0.2
353,632 + -1.1
353,633 - -1.2
353,705 + +0.2
353,706 - -0.2
354,097 + PS417_01605 0.22 +3.1
354,098 - PS417_01605 0.23 -0.8

Or see this region's nucleotide sequence