Strain Fitness in Pseudomonas simiae WCS417 around PS417_04105

Experiment: LB_noSalt with Chloride 1100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04095 and PS417_04100 overlap by 8 nucleotidesPS417_04100 and PS417_04105 are separated by 111 nucleotidesPS417_04105 and PS417_04110 are separated by 188 nucleotidesPS417_04110 and PS417_04115 are separated by 141 nucleotides PS417_04095: PS417_04095 - histidine kinase, at 920,869 to 922,131 _04095 PS417_04100: PS417_04100 - chemotaxis protein CheY, at 922,124 to 922,684 _04100 PS417_04105: PS417_04105 - ABC transporter ATP-binding protein, at 922,796 to 924,520 _04105 PS417_04110: PS417_04110 - cytochrome D ubiquinol oxidase subunit III, at 924,709 to 925,146 _04110 PS417_04115: PS417_04115 - alpha/beta hydrolase, at 925,288 to 925,923 _04115 Position (kb) 922 923 924 925Strain fitness (log2 ratio) -1 0 1 2 3at 922.749 kb on - strandat 922.749 kb on - strandat 922.982 kb on + strand, within PS417_04105at 922.982 kb on + strand, within PS417_04105at 922.982 kb on + strand, within PS417_04105at 922.983 kb on - strand, within PS417_04105at 922.983 kb on - strand, within PS417_04105at 922.983 kb on - strand, within PS417_04105at 923.096 kb on + strand, within PS417_04105at 923.096 kb on + strand, within PS417_04105at 923.147 kb on + strand, within PS417_04105at 923.148 kb on - strand, within PS417_04105at 923.177 kb on + strand, within PS417_04105at 923.178 kb on - strand, within PS417_04105at 923.202 kb on - strand, within PS417_04105at 923.242 kb on + strand, within PS417_04105at 923.242 kb on + strand, within PS417_04105at 923.242 kb on + strand, within PS417_04105at 923.243 kb on - strand, within PS417_04105at 923.274 kb on + strand, within PS417_04105at 923.275 kb on - strandat 923.275 kb on - strand, within PS417_04105at 923.275 kb on - strand, within PS417_04105at 923.362 kb on + strand, within PS417_04105at 923.362 kb on + strand, within PS417_04105at 923.363 kb on - strandat 923.373 kb on - strand, within PS417_04105at 923.373 kb on - strand, within PS417_04105at 923.373 kb on - strand, within PS417_04105at 923.373 kb on - strand, within PS417_04105at 923.525 kb on - strand, within PS417_04105at 923.535 kb on - strand, within PS417_04105at 923.594 kb on - strand, within PS417_04105at 923.597 kb on + strand, within PS417_04105at 923.597 kb on + strand, within PS417_04105at 923.597 kb on + strand, within PS417_04105at 923.598 kb on - strand, within PS417_04105at 923.598 kb on - strand, within PS417_04105at 923.598 kb on - strand, within PS417_04105at 923.598 kb on - strand, within PS417_04105at 923.697 kb on - strand, within PS417_04105at 923.886 kb on + strand, within PS417_04105at 923.969 kb on - strand, within PS417_04105at 923.999 kb on + strand, within PS417_04105at 924.194 kb on + strand, within PS417_04105at 924.195 kb on - strand, within PS417_04105at 924.338 kb on + strand, within PS417_04105at 924.338 kb on + strand, within PS417_04105at 924.338 kb on + strand, within PS417_04105at 924.339 kb on - strand, within PS417_04105at 924.339 kb on - strand, within PS417_04105at 924.339 kb on - strand, within PS417_04105at 924.339 kb on - strand, within PS417_04105at 924.339 kb on - strand, within PS417_04105at 924.339 kb on - strand, within PS417_04105at 924.339 kb on - strand, within PS417_04105at 924.339 kb on - strand, within PS417_04105at 924.390 kb on - strandat 924.561 kb on + strandat 924.568 kb on + strandat 924.568 kb on + strandat 924.569 kb on - strandat 924.710 kb on + strandat 924.726 kb on - strandat 925.203 kb on - strandat 925.203 kb on - strandat 925.245 kb on - strandat 925.426 kb on - strand, within PS417_04115at 925.426 kb on - strand, within PS417_04115at 925.433 kb on + strand, within PS417_04115at 925.474 kb on - strand, within PS417_04115

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 1100 mM
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922,749 - +3.1
922,749 - +0.0
922,982 + PS417_04105 0.11 +0.0
922,982 + PS417_04105 0.11 +0.2
922,982 + PS417_04105 0.11 +0.3
922,983 - PS417_04105 0.11 -0.3
922,983 - PS417_04105 0.11 -0.7
922,983 - PS417_04105 0.11 -0.7
923,096 + PS417_04105 0.17 +0.1
923,096 + PS417_04105 0.17 +0.2
923,147 + PS417_04105 0.20 -0.0
923,148 - PS417_04105 0.20 +0.0
923,177 + PS417_04105 0.22 +0.6
923,178 - PS417_04105 0.22 -0.8
923,202 - PS417_04105 0.24 -0.1
923,242 + PS417_04105 0.26 -0.1
923,242 + PS417_04105 0.26 +0.3
923,242 + PS417_04105 0.26 -0.4
923,243 - PS417_04105 0.26 -0.4
923,274 + PS417_04105 0.28 +0.3
923,275 - +1.7
923,275 - PS417_04105 0.28 +0.2
923,275 - PS417_04105 0.28 +0.2
923,362 + PS417_04105 0.33 +0.1
923,362 + PS417_04105 0.33 -0.0
923,363 - -1.2
923,373 - PS417_04105 0.33 +0.1
923,373 - PS417_04105 0.33 -0.4
923,373 - PS417_04105 0.33 -0.1
923,373 - PS417_04105 0.33 -0.5
923,525 - PS417_04105 0.42 +0.4
923,535 - PS417_04105 0.43 +0.4
923,594 - PS417_04105 0.46 +0.1
923,597 + PS417_04105 0.46 -0.1
923,597 + PS417_04105 0.46 -0.1
923,597 + PS417_04105 0.46 -0.3
923,598 - PS417_04105 0.46 +0.1
923,598 - PS417_04105 0.46 -1.6
923,598 - PS417_04105 0.46 +0.1
923,598 - PS417_04105 0.46 +0.1
923,697 - PS417_04105 0.52 +0.5
923,886 + PS417_04105 0.63 -0.2
923,969 - PS417_04105 0.68 -0.1
923,999 + PS417_04105 0.70 +0.4
924,194 + PS417_04105 0.81 +1.9
924,195 - PS417_04105 0.81 -0.0
924,338 + PS417_04105 0.89 +0.1
924,338 + PS417_04105 0.89 -0.0
924,338 + PS417_04105 0.89 -0.3
924,339 - PS417_04105 0.89 +0.1
924,339 - PS417_04105 0.89 +0.0
924,339 - PS417_04105 0.89 +0.3
924,339 - PS417_04105 0.89 +0.7
924,339 - PS417_04105 0.89 -1.0
924,339 - PS417_04105 0.89 -0.9
924,339 - PS417_04105 0.89 +0.4
924,339 - PS417_04105 0.89 +0.1
924,390 - -0.8
924,561 + -0.2
924,568 + +0.0
924,568 + +0.1
924,569 - +0.4
924,710 + +1.1
924,726 - -0.8
925,203 - -0.2
925,203 - -0.0
925,245 - +0.6
925,426 - PS417_04115 0.22 -1.7
925,426 - PS417_04115 0.22 -0.0
925,433 + PS417_04115 0.23 -1.5
925,474 - PS417_04115 0.29 -0.9

Or see this region's nucleotide sequence