Strain Fitness in Pseudomonas simiae WCS417 around PS417_03715

Experiment: LB_noSalt with Chloride 1100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03710 and PS417_03715 are separated by 150 nucleotidesPS417_03715 and PS417_03720 are separated by 9 nucleotides PS417_03710: PS417_03710 - metal-binding protein, at 839,961 to 840,719 _03710 PS417_03715: PS417_03715 - sulfate adenylyltransferase subunit 2, at 840,870 to 841,787 _03715 PS417_03720: PS417_03720 - adenylylsulfate kinase, at 841,797 to 843,695 _03720 Position (kb) 840 841 842Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 839.916 kb on - strandat 839.916 kb on - strandat 839.918 kb on - strandat 839.918 kb on - strandat 839.918 kb on - strandat 839.918 kb on - strandat 839.949 kb on + strandat 839.950 kb on - strandat 839.950 kb on - strandat 839.961 kb on - strandat 840.162 kb on + strand, within PS417_03710at 840.507 kb on + strand, within PS417_03710at 840.507 kb on + strand, within PS417_03710at 840.508 kb on - strand, within PS417_03710at 840.543 kb on + strand, within PS417_03710at 840.543 kb on + strand, within PS417_03710at 840.544 kb on - strand, within PS417_03710at 840.643 kb on + strand, within PS417_03710at 840.643 kb on + strand, within PS417_03710at 840.643 kb on + strand, within PS417_03710at 840.643 kb on + strand, within PS417_03710at 840.644 kb on - strandat 840.758 kb on + strandat 840.758 kb on + strandat 840.773 kb on + strandat 840.807 kb on + strandat 840.807 kb on + strandat 840.808 kb on - strandat 840.808 kb on - strandat 840.845 kb on + strandat 840.845 kb on + strandat 840.845 kb on + strandat 840.845 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 1100 mM
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839,916 - +0.2
839,916 - +0.5
839,918 - +0.3
839,918 - +0.2
839,918 - +0.3
839,918 - +0.7
839,949 + -0.4
839,950 - +0.5
839,950 - +0.6
839,961 - +0.4
840,162 + PS417_03710 0.26 +0.5
840,507 + PS417_03710 0.72 +0.1
840,507 + PS417_03710 0.72 -0.1
840,508 - PS417_03710 0.72 -2.8
840,543 + PS417_03710 0.77 -0.7
840,543 + PS417_03710 0.77 -0.0
840,544 - PS417_03710 0.77 +0.5
840,643 + PS417_03710 0.90 +0.5
840,643 + PS417_03710 0.90 +1.9
840,643 + PS417_03710 0.90 +0.7
840,643 + PS417_03710 0.90 -0.1
840,644 - +0.6
840,758 + +0.3
840,758 + -1.1
840,773 + +1.2
840,807 + +0.4
840,807 + -0.2
840,808 - -0.2
840,808 - -0.0
840,845 + +0.4
840,845 + -0.2
840,845 + -0.4
840,845 + +0.1

Or see this region's nucleotide sequence