Strain Fitness in Pseudomonas simiae WCS417 around PS417_00005

Experiment: LB_noSalt with Chloride 1100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00005 and PS417_00010 are separated by 38 nucleotides PS417_00005: PS417_00005 - chromosomal replication initiation protein, at 225 to 1,742 _00005 PS417_00010: PS417_00010 - DNA polymerase III subunit beta, at 1,781 to 2,884 _00010 Position (kb) 0 1 2Strain fitness (log2 ratio) -3 -2 -1 0 1at 0.045 kb on + strandat 0.046 kb on - strandat 0.046 kb on - strandat 0.079 kb on + strandat 0.080 kb on - strandat 0.080 kb on - strandat 0.104 kb on - strandat 0.146 kb on + strandat 0.147 kb on - strandat 0.147 kb on - strandat 1.759 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 1100 mM
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45 + -0.1
46 - -2.9
46 - -0.1
79 + -2.4
80 - -0.2
80 - +0.0
104 - -0.9
146 + -1.9
147 - -0.2
147 - -1.9
1,759 + -0.3

Or see this region's nucleotide sequence