Strain Fitness in Pseudomonas simiae WCS417 around PS417_26660

Experiment: LB_noSalt with Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26655 and PS417_26660 overlap by 4 nucleotidesPS417_26660 and PS417_26665 are separated by 12 nucleotidesPS417_26665 and PS417_26670 are separated by 46 nucleotides PS417_26655: PS417_26655 - chemotaxis protein, at 5,763,571 to 5,765,622 _26655 PS417_26660: PS417_26660 - protein PilI, at 5,765,619 to 5,766,143 _26660 PS417_26665: PS417_26665 - chemotaxis protein CheY, at 5,766,156 to 5,766,521 _26665 PS417_26670: PS417_26670 - pilus assembly protein PilG, at 5,766,568 to 5,766,975 _26670 Position (kb) 5765 5766 5767Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5764.782 kb on + strand, within PS417_26655at 5764.782 kb on + strand, within PS417_26655at 5765.089 kb on + strand, within PS417_26655at 5765.090 kb on - strand, within PS417_26655at 5765.287 kb on + strand, within PS417_26655at 5765.474 kb on + strandat 5765.475 kb on - strandat 5765.475 kb on - strandat 5765.486 kb on + strandat 5765.486 kb on + strandat 5765.486 kb on + strandat 5765.487 kb on - strandat 5765.810 kb on + strand, within PS417_26660at 5765.810 kb on + strand, within PS417_26660at 5765.811 kb on - strandat 5765.812 kb on + strand, within PS417_26660at 5765.813 kb on - strand, within PS417_26660at 5765.813 kb on - strand, within PS417_26660at 5765.813 kb on - strand, within PS417_26660at 5766.004 kb on + strand, within PS417_26660at 5766.005 kb on - strand, within PS417_26660at 5766.005 kb on - strand, within PS417_26660at 5766.169 kb on - strandat 5766.535 kb on - strandat 5766.535 kb on - strandat 5766.538 kb on + strandat 5766.538 kb on + strandat 5766.538 kb on + strandat 5766.538 kb on + strandat 5766.538 kb on + strandat 5766.539 kb on - strandat 5766.539 kb on - strandat 5766.539 kb on - strandat 5766.539 kb on - strandat 5766.539 kb on - strandat 5766.539 kb on - strandat 5766.539 kb on - strandat 5766.606 kb on - strandat 5766.606 kb on - strandat 5767.017 kb on + strandat 5767.018 kb on - strandat 5767.018 kb on - strandat 5767.092 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 500 mM
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5,764,782 + PS417_26655 0.59 +2.0
5,764,782 + PS417_26655 0.59 +1.0
5,765,089 + PS417_26655 0.74 +1.4
5,765,090 - PS417_26655 0.74 +2.0
5,765,287 + PS417_26655 0.84 +2.5
5,765,474 + +1.4
5,765,475 - +0.3
5,765,475 - +3.1
5,765,486 + +1.3
5,765,486 + +0.5
5,765,486 + +2.4
5,765,487 - +1.6
5,765,810 + PS417_26660 0.36 +2.8
5,765,810 + PS417_26660 0.36 +2.3
5,765,811 - +4.5
5,765,812 + PS417_26660 0.37 +1.7
5,765,813 - PS417_26660 0.37 +1.1
5,765,813 - PS417_26660 0.37 +1.2
5,765,813 - PS417_26660 0.37 +1.6
5,766,004 + PS417_26660 0.73 +2.1
5,766,005 - PS417_26660 0.74 +1.0
5,766,005 - PS417_26660 0.74 +1.4
5,766,169 - -1.9
5,766,535 - -0.5
5,766,535 - -0.9
5,766,538 + +1.1
5,766,538 + -0.4
5,766,538 + +1.9
5,766,538 + +1.2
5,766,538 + +0.9
5,766,539 - +0.1
5,766,539 - +2.7
5,766,539 - -0.5
5,766,539 - -1.0
5,766,539 - -0.6
5,766,539 - -1.6
5,766,539 - +0.0
5,766,606 - -0.1
5,766,606 - -0.1
5,767,017 + +1.3
5,767,018 - -0.5
5,767,018 - -0.4
5,767,092 - -0.2

Or see this region's nucleotide sequence