Strain Fitness in Pseudomonas simiae WCS417 around PS417_04510

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04500 and PS417_04505 are separated by 36 nucleotidesPS417_04505 and PS417_04510 are separated by 131 nucleotidesPS417_04510 and PS417_04515 are separated by 242 nucleotides PS417_04500: PS417_04500 - hypothetical protein, at 994,290 to 994,550 _04500 PS417_04505: PS417_04505 - hypothetical protein, at 994,587 to 995,207 _04505 PS417_04510: PS417_04510 - chemotaxis protein, at 995,339 to 997,477 _04510 PS417_04515: PS417_04515 - peptidase M48, at 997,720 to 998,538 _04515 Position (kb) 995 996 997 998Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 994.485 kb on + strand, within PS417_04500at 994.485 kb on + strand, within PS417_04500at 994.548 kb on + strandat 994.549 kb on - strandat 995.272 kb on + strandat 995.279 kb on + strandat 995.279 kb on + strandat 995.280 kb on - strandat 995.280 kb on - strandat 995.280 kb on - strandat 995.285 kb on + strandat 995.285 kb on + strandat 995.285 kb on + strandat 995.286 kb on - strandat 995.286 kb on - strandat 995.286 kb on - strandat 995.286 kb on - strandat 995.286 kb on - strandat 996.088 kb on + strand, within PS417_04510at 996.089 kb on - strand, within PS417_04510at 996.572 kb on + strand, within PS417_04510at 996.573 kb on - strand, within PS417_04510at 996.665 kb on - strand, within PS417_04510at 996.666 kb on + strand, within PS417_04510at 996.667 kb on - strand, within PS417_04510at 996.667 kb on - strand, within PS417_04510at 996.720 kb on + strand, within PS417_04510at 996.861 kb on + strand, within PS417_04510at 996.862 kb on - strand, within PS417_04510at 996.912 kb on + strand, within PS417_04510at 996.912 kb on + strand, within PS417_04510at 996.912 kb on + strand, within PS417_04510at 996.913 kb on - strand, within PS417_04510at 996.913 kb on - strand, within PS417_04510at 996.915 kb on + strand, within PS417_04510at 996.915 kb on + strand, within PS417_04510at 996.915 kb on + strand, within PS417_04510at 997.062 kb on + strand, within PS417_04510at 997.062 kb on + strand, within PS417_04510at 997.063 kb on - strand, within PS417_04510at 997.108 kb on - strand, within PS417_04510at 997.108 kb on - strand, within PS417_04510at 997.395 kb on + strandat 997.395 kb on + strandat 997.501 kb on + strandat 997.501 kb on + strandat 997.609 kb on + strandat 997.609 kb on + strandat 997.647 kb on + strandat 997.648 kb on - strandat 997.674 kb on + strandat 997.675 kb on - strandat 997.739 kb on + strandat 997.740 kb on - strandat 997.828 kb on + strand, within PS417_04515at 997.828 kb on + strand, within PS417_04515at 997.828 kb on + strand, within PS417_04515at 997.828 kb on + strand, within PS417_04515at 997.829 kb on - strand, within PS417_04515at 997.829 kb on - strand, within PS417_04515at 997.870 kb on + strand, within PS417_04515at 997.870 kb on + strand, within PS417_04515at 997.870 kb on + strand, within PS417_04515at 997.870 kb on + strand, within PS417_04515at 997.870 kb on + strand, within PS417_04515at 997.871 kb on - strand, within PS417_04515at 997.871 kb on - strand, within PS417_04515at 997.871 kb on - strand, within PS417_04515at 997.871 kb on - strand, within PS417_04515at 997.871 kb on - strand, within PS417_04515at 997.871 kb on - strand, within PS417_04515at 998.090 kb on - strand, within PS417_04515at 998.291 kb on - strand, within PS417_04515at 998.371 kb on + strand, within PS417_04515at 998.371 kb on + strand, within PS417_04515at 998.371 kb on + strand, within PS417_04515at 998.449 kb on - strand, within PS417_04515

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
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994,485 + PS417_04500 0.75 -0.2
994,485 + PS417_04500 0.75 -0.2
994,548 + -0.0
994,549 - -0.8
995,272 + -2.6
995,279 + +1.0
995,279 + -0.2
995,280 - -0.2
995,280 - +0.1
995,280 - -0.1
995,285 + +1.4
995,285 + -2.1
995,285 + +0.6
995,286 - +2.6
995,286 - -0.7
995,286 - +0.4
995,286 - -1.0
995,286 - +0.8
996,088 + PS417_04510 0.35 +0.6
996,089 - PS417_04510 0.35 -0.0
996,572 + PS417_04510 0.58 +3.8
996,573 - PS417_04510 0.58 +0.7
996,665 - PS417_04510 0.62 +0.0
996,666 + PS417_04510 0.62 +0.4
996,667 - PS417_04510 0.62 +3.7
996,667 - PS417_04510 0.62 +0.4
996,720 + PS417_04510 0.65 -0.4
996,861 + PS417_04510 0.71 +4.9
996,862 - PS417_04510 0.71 +2.9
996,912 + PS417_04510 0.74 -0.8
996,912 + PS417_04510 0.74 -1.5
996,912 + PS417_04510 0.74 -0.8
996,913 - PS417_04510 0.74 -0.2
996,913 - PS417_04510 0.74 -1.4
996,915 + PS417_04510 0.74 -0.6
996,915 + PS417_04510 0.74 -0.1
996,915 + PS417_04510 0.74 +0.2
997,062 + PS417_04510 0.81 +0.5
997,062 + PS417_04510 0.81 -1.0
997,063 - PS417_04510 0.81 +0.4
997,108 - PS417_04510 0.83 -1.8
997,108 - PS417_04510 0.83 +0.8
997,395 + +5.6
997,395 + -2.4
997,501 + -0.4
997,501 + -0.0
997,609 + +0.5
997,609 + -0.6
997,647 + -1.4
997,648 - +0.2
997,674 + +0.9
997,675 - -0.9
997,739 + +1.1
997,740 - +0.6
997,828 + PS417_04515 0.13 -0.4
997,828 + PS417_04515 0.13 +0.0
997,828 + PS417_04515 0.13 +0.2
997,828 + PS417_04515 0.13 -1.2
997,829 - PS417_04515 0.13 +1.2
997,829 - PS417_04515 0.13 -0.2
997,870 + PS417_04515 0.18 -1.1
997,870 + PS417_04515 0.18 +1.1
997,870 + PS417_04515 0.18 +0.2
997,870 + PS417_04515 0.18 -1.6
997,870 + PS417_04515 0.18 +1.0
997,871 - PS417_04515 0.18 +1.0
997,871 - PS417_04515 0.18 -1.3
997,871 - PS417_04515 0.18 +1.1
997,871 - PS417_04515 0.18 -0.7
997,871 - PS417_04515 0.18 -0.5
997,871 - PS417_04515 0.18 -0.6
998,090 - PS417_04515 0.45 +0.9
998,291 - PS417_04515 0.70 -0.4
998,371 + PS417_04515 0.79 -0.7
998,371 + PS417_04515 0.79 -0.2
998,371 + PS417_04515 0.79 +0.3
998,449 - PS417_04515 0.89 +0.2

Or see this region's nucleotide sequence