Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03350 and PS417_03355 are separated by 18 nucleotides PS417_03355 and PS417_03360 overlap by 77 nucleotides
PS417_03350: PS417_03350 - cytochrome C peroxidase, at 768,553 to 769,659
_03350
PS417_03355: PS417_03355 - cation transporter, at 769,678 to 772,815
_03355
PS417_03360: PS417_03360 - histidine kinase, at 772,739 to 774,175
_03360
Position (kb) 769
770
771
772
773 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 768.757 kb on - strand, within PS417_03350 at 768.979 kb on + strand, within PS417_03350 at 768.980 kb on - strand, within PS417_03350 at 769.493 kb on + strand, within PS417_03350 at 769.493 kb on + strand, within PS417_03350 at 769.494 kb on - strand, within PS417_03350 at 769.552 kb on + strand at 770.100 kb on - strand, within PS417_03355 at 770.150 kb on - strand, within PS417_03355 at 770.150 kb on - strand, within PS417_03355 at 770.293 kb on + strand, within PS417_03355 at 770.666 kb on - strand, within PS417_03355 at 770.735 kb on + strand, within PS417_03355 at 770.735 kb on + strand, within PS417_03355 at 770.838 kb on + strand, within PS417_03355 at 770.839 kb on - strand, within PS417_03355 at 770.839 kb on - strand, within PS417_03355 at 771.065 kb on - strand, within PS417_03355 at 771.254 kb on - strand, within PS417_03355 at 771.363 kb on + strand, within PS417_03355 at 771.498 kb on - strand, within PS417_03355 at 771.563 kb on - strand, within PS417_03355 at 771.668 kb on - strand, within PS417_03355 at 772.404 kb on - strand, within PS417_03355 at 772.494 kb on + strand, within PS417_03355 at 772.740 kb on + strand at 772.741 kb on - strand at 772.741 kb on - strand at 772.741 kb on - strand at 772.774 kb on + strand at 772.775 kb on - strand at 773.028 kb on + strand, within PS417_03360 at 773.346 kb on + strand, within PS417_03360 at 773.346 kb on + strand, within PS417_03360 at 773.347 kb on - strand, within PS417_03360 at 773.689 kb on - strand, within PS417_03360 at 773.742 kb on - strand, within PS417_03360 at 773.745 kb on + strand, within PS417_03360 at 773.745 kb on + strand, within PS417_03360 at 773.746 kb on - strand, within PS417_03360
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days remove 768,757 - PS417_03350 0.18 -0.5 768,979 + PS417_03350 0.38 +0.7 768,980 - PS417_03350 0.39 -0.2 769,493 + PS417_03350 0.85 +0.4 769,493 + PS417_03350 0.85 -0.2 769,494 - PS417_03350 0.85 -0.5 769,552 + +0.2 770,100 - PS417_03355 0.13 +0.7 770,150 - PS417_03355 0.15 +0.2 770,150 - PS417_03355 0.15 +0.0 770,293 + PS417_03355 0.20 +0.6 770,666 - PS417_03355 0.31 +3.7 770,735 + PS417_03355 0.34 -1.0 770,735 + PS417_03355 0.34 -0.6 770,838 + PS417_03355 0.37 -1.6 770,839 - PS417_03355 0.37 -0.5 770,839 - PS417_03355 0.37 +1.1 771,065 - PS417_03355 0.44 +0.2 771,254 - PS417_03355 0.50 +0.8 771,363 + PS417_03355 0.54 -0.2 771,498 - PS417_03355 0.58 -0.7 771,563 - PS417_03355 0.60 +0.8 771,668 - PS417_03355 0.63 +0.1 772,404 - PS417_03355 0.87 +0.5 772,494 + PS417_03355 0.90 +4.5 772,740 + +0.2 772,741 - -0.8 772,741 - -0.2 772,741 - -1.1 772,774 + -0.3 772,775 - +0.3 773,028 + PS417_03360 0.20 +0.4 773,346 + PS417_03360 0.42 +1.4 773,346 + PS417_03360 0.42 -0.4 773,347 - PS417_03360 0.42 -0.3 773,689 - PS417_03360 0.66 +1.9 773,742 - PS417_03360 0.70 +0.5 773,745 + PS417_03360 0.70 +0.5 773,745 + PS417_03360 0.70 -0.1 773,746 - PS417_03360 0.70 +2.6
Or see this region's nucleotide sequence