Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02775 and PS417_02780 are separated by 238 nucleotides PS417_02780 and PS417_02785 are separated by 73 nucleotides
PS417_02775: PS417_02775 - heat-shock protein, at 630,748 to 632,016
_02775
PS417_02780: PS417_02780 - DNA-binding protein, at 632,255 to 633,199
_02780
PS417_02785: PS417_02785 - Urease (EC 3.5.1.5) <small>(from data)</small>, at 633,273 to 634,973
_02785
Position (kb) 632
633
634 Strain fitness (log2 ratio) -2
-1
0
1 at 631.268 kb on + strand, within PS417_02775 at 631.268 kb on + strand, within PS417_02775 at 631.269 kb on - strand, within PS417_02775 at 631.826 kb on + strand, within PS417_02775 at 631.827 kb on - strand, within PS417_02775 at 631.850 kb on + strand, within PS417_02775 at 631.850 kb on + strand, within PS417_02775 at 632.020 kb on + strand at 632.054 kb on + strand at 632.054 kb on + strand at 632.054 kb on + strand at 632.054 kb on + strand at 632.054 kb on + strand at 632.055 kb on - strand at 632.055 kb on - strand at 632.055 kb on - strand at 632.055 kb on - strand at 632.055 kb on - strand at 632.055 kb on - strand at 632.078 kb on - strand at 632.138 kb on + strand at 632.259 kb on - strand at 632.270 kb on + strand at 632.271 kb on - strand at 632.273 kb on + strand at 632.274 kb on - strand at 632.274 kb on - strand at 632.274 kb on - strand at 632.411 kb on + strand, within PS417_02780 at 632.411 kb on + strand, within PS417_02780 at 632.411 kb on + strand, within PS417_02780 at 632.412 kb on - strand, within PS417_02780 at 632.412 kb on - strand, within PS417_02780 at 632.633 kb on - strand, within PS417_02780 at 633.092 kb on + strand, within PS417_02780 at 633.093 kb on - strand, within PS417_02780 at 633.757 kb on + strand, within PS417_02785 at 633.758 kb on - strand, within PS417_02785 at 633.758 kb on - strand, within PS417_02785 at 633.769 kb on + strand, within PS417_02785 at 633.770 kb on - strand, within PS417_02785 at 633.857 kb on + strand, within PS417_02785 at 634.165 kb on + strand, within PS417_02785 at 634.166 kb on - strand, within PS417_02785
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days remove 631,268 + PS417_02775 0.41 -2.6 631,268 + PS417_02775 0.41 +0.2 631,269 - PS417_02775 0.41 -2.1 631,826 + PS417_02775 0.85 -1.7 631,827 - PS417_02775 0.85 +0.1 631,850 + PS417_02775 0.87 -0.6 631,850 + PS417_02775 0.87 -0.1 632,020 + +1.0 632,054 + -0.9 632,054 + +0.6 632,054 + -0.2 632,054 + -0.0 632,054 + -1.6 632,055 - -0.3 632,055 - -0.5 632,055 - +1.0 632,055 - +0.3 632,055 - +0.2 632,055 - -0.4 632,078 - -0.4 632,138 + +0.0 632,259 - +0.9 632,270 + -1.2 632,271 - -0.6 632,273 + +0.4 632,274 - -2.3 632,274 - +0.5 632,274 - +0.2 632,411 + PS417_02780 0.17 -0.4 632,411 + PS417_02780 0.17 -0.7 632,411 + PS417_02780 0.17 -0.8 632,412 - PS417_02780 0.17 +0.7 632,412 - PS417_02780 0.17 -1.7 632,633 - PS417_02780 0.40 -0.3 633,092 + PS417_02780 0.89 -1.8 633,093 - PS417_02780 0.89 -0.8 633,757 + PS417_02785 0.28 +1.4 633,758 - PS417_02785 0.29 -1.0 633,758 - PS417_02785 0.29 +1.7 633,769 + PS417_02785 0.29 -0.5 633,770 - PS417_02785 0.29 -0.4 633,857 + PS417_02785 0.34 -1.3 634,165 + PS417_02785 0.52 +0.8 634,166 - PS417_02785 0.52 -0.1
Or see this region's nucleotide sequence