Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27750 and PS417_27755 are separated by 70 nucleotides PS417_27755 and PS417_27760 are separated by 11 nucleotides PS417_27760 and PS417_27765 are separated by 458 nucleotides PS417_27765 and PS417_27770 are separated by 27 nucleotides PS417_27770 and PS417_27775 are separated by 141 nucleotides
PS417_27750: PS417_27750 - transcriptional regulator, at 5,986,044 to 5,986,406
_27750
PS417_27755: PS417_27755 - 50S ribosomal protein L33, at 5,986,477 to 5,986,632
_27755
PS417_27760: PS417_27760 - 50S ribosomal protein L28, at 5,986,644 to 5,986,877
_27760
PS417_27765: PS417_27765 - peptide ABC transporter substrate-binding protein, at 5,987,336 to 5,988,928
_27765
PS417_27770: PS417_27770 - hypothetical protein, at 5,988,956 to 5,989,630
_27770
PS417_27775: PS417_27775 - phosphopantothenoylcysteine decarboxylase, at 5,989,772 to 5,990,980
_27775
Position (kb) 5987
5988
5989 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5986.380 kb on + strand at 5986.381 kb on - strand at 5987.158 kb on - strand at 5987.218 kb on + strand at 5987.250 kb on + strand at 5987.273 kb on + strand at 5987.456 kb on + strand at 5987.456 kb on + strand at 5987.456 kb on + strand at 5987.456 kb on + strand at 5987.456 kb on + strand at 5987.456 kb on + strand at 5987.456 kb on + strand at 5987.457 kb on - strand at 5987.457 kb on - strand at 5987.457 kb on - strand at 5987.457 kb on - strand at 5987.588 kb on + strand, within PS417_27765 at 5987.588 kb on + strand, within PS417_27765 at 5987.589 kb on - strand, within PS417_27765 at 5987.589 kb on - strand, within PS417_27765 at 5987.591 kb on - strand, within PS417_27765 at 5987.591 kb on - strand, within PS417_27765 at 5987.993 kb on + strand, within PS417_27765 at 5988.012 kb on - strand, within PS417_27765 at 5988.295 kb on - strand, within PS417_27765 at 5988.295 kb on - strand, within PS417_27765 at 5988.350 kb on + strand, within PS417_27765 at 5988.350 kb on + strand, within PS417_27765 at 5988.464 kb on - strand, within PS417_27765 at 5988.763 kb on - strand, within PS417_27765 at 5988.770 kb on - strand at 5989.140 kb on + strand, within PS417_27770 at 5989.173 kb on + strand, within PS417_27770 at 5989.173 kb on + strand, within PS417_27770 at 5989.625 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days remove 5,986,380 + -0.1 5,986,381 - -2.3 5,987,158 - +0.6 5,987,218 + -1.6 5,987,250 + +0.4 5,987,273 + -1.5 5,987,456 + -0.6 5,987,456 + -1.2 5,987,456 + -0.2 5,987,456 + +0.4 5,987,456 + -0.5 5,987,456 + -0.3 5,987,456 + -0.1 5,987,457 - +2.0 5,987,457 - -0.2 5,987,457 - +0.8 5,987,457 - -0.3 5,987,588 + PS417_27765 0.16 +2.6 5,987,588 + PS417_27765 0.16 +3.1 5,987,589 - PS417_27765 0.16 +0.2 5,987,589 - PS417_27765 0.16 +0.1 5,987,591 - PS417_27765 0.16 +1.2 5,987,591 - PS417_27765 0.16 +0.0 5,987,993 + PS417_27765 0.41 +0.6 5,988,012 - PS417_27765 0.42 +0.6 5,988,295 - PS417_27765 0.60 +0.4 5,988,295 - PS417_27765 0.60 -0.0 5,988,350 + PS417_27765 0.64 +0.0 5,988,350 + PS417_27765 0.64 +0.3 5,988,464 - PS417_27765 0.71 -0.3 5,988,763 - PS417_27765 0.90 -0.9 5,988,770 - -1.2 5,989,140 + PS417_27770 0.27 +0.3 5,989,173 + PS417_27770 0.32 -0.2 5,989,173 + PS417_27770 0.32 -0.0 5,989,625 - +0.3
Or see this region's nucleotide sequence