Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27620 and PS417_27625 are separated by 422 nucleotides PS417_27625 and PS417_27630 are separated by 26 nucleotides PS417_27630 and PS417_27635 are separated by 94 nucleotides
PS417_27620: PS417_27620 - nitrogen regulatory protein P-II 1, at 5,956,053 to 5,956,391
_27620
PS417_27625: PS417_27625 - hypothetical protein, at 5,956,814 to 5,957,074
_27625
PS417_27630: PS417_27630 - MFS transporter, at 5,957,101 to 5,958,372
_27630
PS417_27635: PS417_27635 - magnesium chelatase, at 5,958,467 to 5,959,963
_27635
Position (kb) 5957
5958
5959 Strain fitness (log2 ratio) -1
0
1
2
3 at 5956.762 kb on + strand at 5956.763 kb on - strand at 5956.764 kb on + strand at 5956.764 kb on + strand at 5956.764 kb on + strand at 5956.778 kb on + strand at 5956.778 kb on + strand at 5956.779 kb on - strand at 5956.779 kb on - strand at 5957.133 kb on - strand at 5957.148 kb on - strand at 5957.302 kb on + strand, within PS417_27630 at 5957.303 kb on - strand, within PS417_27630 at 5957.743 kb on + strand, within PS417_27630 at 5957.744 kb on - strand, within PS417_27630 at 5957.744 kb on - strand, within PS417_27630 at 5957.764 kb on + strand, within PS417_27630 at 5957.764 kb on + strand, within PS417_27630 at 5957.833 kb on + strand, within PS417_27630 at 5957.833 kb on + strand, within PS417_27630 at 5957.848 kb on - strand, within PS417_27630 at 5957.866 kb on + strand, within PS417_27630 at 5957.866 kb on + strand, within PS417_27630 at 5957.867 kb on - strand, within PS417_27630 at 5957.997 kb on + strand, within PS417_27630 at 5957.997 kb on + strand, within PS417_27630 at 5957.997 kb on + strand, within PS417_27630 at 5957.997 kb on + strand, within PS417_27630 at 5957.998 kb on - strand, within PS417_27630 at 5957.998 kb on - strand, within PS417_27630 at 5957.998 kb on - strand, within PS417_27630 at 5957.998 kb on - strand, within PS417_27630 at 5958.338 kb on - strand at 5958.349 kb on + strand at 5958.349 kb on + strand at 5958.349 kb on + strand at 5958.373 kb on + strand at 5958.373 kb on + strand at 5958.374 kb on - strand at 5958.374 kb on - strand at 5958.374 kb on - strand at 5958.374 kb on - strand at 5958.374 kb on - strand at 5958.374 kb on - strand at 5958.374 kb on - strand at 5958.382 kb on + strand at 5958.419 kb on - strand at 5958.419 kb on - strand at 5959.013 kb on + strand, within PS417_27635 at 5959.014 kb on - strand, within PS417_27635 at 5959.048 kb on - strand, within PS417_27635
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days remove 5,956,762 + -0.2 5,956,763 - -0.3 5,956,764 + -1.0 5,956,764 + -0.2 5,956,764 + +1.7 5,956,778 + -0.6 5,956,778 + +0.5 5,956,779 - -1.3 5,956,779 - -0.9 5,957,133 - +1.7 5,957,148 - +0.2 5,957,302 + PS417_27630 0.16 -0.2 5,957,303 - PS417_27630 0.16 -1.2 5,957,743 + PS417_27630 0.50 -0.6 5,957,744 - PS417_27630 0.51 +1.7 5,957,744 - PS417_27630 0.51 +0.4 5,957,764 + PS417_27630 0.52 -0.3 5,957,764 + PS417_27630 0.52 -0.1 5,957,833 + PS417_27630 0.58 -1.2 5,957,833 + PS417_27630 0.58 +0.9 5,957,848 - PS417_27630 0.59 -0.6 5,957,866 + PS417_27630 0.60 +1.6 5,957,866 + PS417_27630 0.60 +0.5 5,957,867 - PS417_27630 0.60 +0.2 5,957,997 + PS417_27630 0.70 +0.4 5,957,997 + PS417_27630 0.70 -0.4 5,957,997 + PS417_27630 0.70 +2.0 5,957,997 + PS417_27630 0.70 +1.0 5,957,998 - PS417_27630 0.71 +0.5 5,957,998 - PS417_27630 0.71 -0.1 5,957,998 - PS417_27630 0.71 -1.5 5,957,998 - PS417_27630 0.71 +2.9 5,958,338 - -0.6 5,958,349 + +0.0 5,958,349 + +0.3 5,958,349 + +2.3 5,958,373 + +0.8 5,958,373 + -0.8 5,958,374 - +0.2 5,958,374 - +0.2 5,958,374 - -0.5 5,958,374 - -0.0 5,958,374 - +0.0 5,958,374 - +0.6 5,958,374 - -0.4 5,958,382 + -0.3 5,958,419 - -0.4 5,958,419 - -0.5 5,959,013 + PS417_27635 0.36 +0.5 5,959,014 - PS417_27635 0.37 -0.5 5,959,048 - PS417_27635 0.39 -0.3
Or see this region's nucleotide sequence