Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26785 and PS417_26790 are separated by 74 nucleotides PS417_26790 and PS417_26795 are separated by 108 nucleotides PS417_26795 and PS417_26800 are separated by 129 nucleotides
PS417_26785: PS417_26785 - membrane protein, at 5,784,514 to 5,784,891
_26785
PS417_26790: PS417_26790 - peptidoglycan transglycosylase, at 5,784,966 to 5,785,688
_26790
PS417_26795: PS417_26795 - RNA polymerase sigma 70, at 5,785,797 to 5,786,651
_26795
PS417_26800: PS417_26800 - cell division protein FtsX, at 5,786,781 to 5,787,806
_26800
Position (kb) 5785
5786
5787 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5784.927 kb on + strand at 5784.927 kb on + strand at 5784.927 kb on + strand at 5784.927 kb on + strand at 5784.927 kb on + strand at 5784.928 kb on - strand at 5784.928 kb on - strand at 5784.928 kb on - strand at 5784.928 kb on - strand at 5784.929 kb on + strand at 5784.930 kb on - strand at 5784.930 kb on - strand at 5784.965 kb on + strand at 5784.965 kb on + strand at 5785.082 kb on - strand, within PS417_26790 at 5785.341 kb on + strand, within PS417_26790 at 5785.342 kb on - strand, within PS417_26790 at 5785.524 kb on + strand, within PS417_26790 at 5785.524 kb on + strand, within PS417_26790 at 5785.582 kb on - strand, within PS417_26790 at 5785.582 kb on - strand, within PS417_26790 at 5785.734 kb on + strand at 5785.734 kb on + strand at 5786.675 kb on - strand at 5786.742 kb on - strand at 5786.751 kb on - strand at 5786.751 kb on - strand at 5786.751 kb on - strand at 5786.768 kb on - strand at 5786.779 kb on - strand at 5786.783 kb on - strand at 5786.783 kb on - strand at 5786.803 kb on - strand at 5786.803 kb on - strand at 5786.837 kb on - strand at 5786.837 kb on - strand at 5787.005 kb on - strand, within PS417_26800 at 5787.020 kb on - strand, within PS417_26800 at 5787.040 kb on + strand, within PS417_26800 at 5787.040 kb on + strand, within PS417_26800 at 5787.041 kb on - strand, within PS417_26800 at 5787.041 kb on - strand, within PS417_26800 at 5787.041 kb on - strand, within PS417_26800 at 5787.041 kb on - strand, within PS417_26800 at 5787.041 kb on - strand, within PS417_26800 at 5787.041 kb on - strand, within PS417_26800 at 5787.075 kb on + strand, within PS417_26800 at 5787.076 kb on - strand, within PS417_26800 at 5787.116 kb on + strand, within PS417_26800 at 5787.116 kb on + strand, within PS417_26800 at 5787.116 kb on + strand, within PS417_26800 at 5787.117 kb on - strand, within PS417_26800 at 5787.117 kb on - strand, within PS417_26800 at 5787.120 kb on + strand, within PS417_26800 at 5787.132 kb on + strand, within PS417_26800 at 5787.208 kb on - strand, within PS417_26800 at 5787.216 kb on + strand, within PS417_26800 at 5787.216 kb on + strand, within PS417_26800 at 5787.217 kb on - strand, within PS417_26800 at 5787.217 kb on - strand, within PS417_26800 at 5787.217 kb on - strand, within PS417_26800 at 5787.217 kb on - strand, within PS417_26800 at 5787.409 kb on + strand, within PS417_26800 at 5787.409 kb on + strand, within PS417_26800 at 5787.410 kb on - strand, within PS417_26800 at 5787.494 kb on - strand, within PS417_26800 at 5787.546 kb on - strand, within PS417_26800
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days remove 5,784,927 + -1.3 5,784,927 + +0.2 5,784,927 + -0.1 5,784,927 + -0.8 5,784,927 + -0.3 5,784,928 - -1.7 5,784,928 - +1.4 5,784,928 - +4.4 5,784,928 - +0.5 5,784,929 + -1.4 5,784,930 - +0.8 5,784,930 - -1.3 5,784,965 + -0.5 5,784,965 + +0.3 5,785,082 - PS417_26790 0.16 +0.8 5,785,341 + PS417_26790 0.52 +1.0 5,785,342 - PS417_26790 0.52 -0.3 5,785,524 + PS417_26790 0.77 +0.6 5,785,524 + PS417_26790 0.77 +0.3 5,785,582 - PS417_26790 0.85 +0.4 5,785,582 - PS417_26790 0.85 +0.8 5,785,734 + -0.5 5,785,734 + -1.8 5,786,675 - -0.4 5,786,742 - -0.3 5,786,751 - +0.3 5,786,751 - -1.0 5,786,751 - +0.8 5,786,768 - +0.1 5,786,779 - -1.3 5,786,783 - -0.5 5,786,783 - +0.1 5,786,803 - -0.1 5,786,803 - +0.1 5,786,837 - -1.8 5,786,837 - -0.3 5,787,005 - PS417_26800 0.22 -0.7 5,787,020 - PS417_26800 0.23 +0.3 5,787,040 + PS417_26800 0.25 +0.3 5,787,040 + PS417_26800 0.25 +0.3 5,787,041 - PS417_26800 0.25 +0.8 5,787,041 - PS417_26800 0.25 +0.0 5,787,041 - PS417_26800 0.25 +0.6 5,787,041 - PS417_26800 0.25 +0.4 5,787,041 - PS417_26800 0.25 -0.4 5,787,041 - PS417_26800 0.25 +0.0 5,787,075 + PS417_26800 0.29 -0.3 5,787,076 - PS417_26800 0.29 -0.6 5,787,116 + PS417_26800 0.33 -0.8 5,787,116 + PS417_26800 0.33 +1.6 5,787,116 + PS417_26800 0.33 +0.0 5,787,117 - PS417_26800 0.33 +0.4 5,787,117 - PS417_26800 0.33 -0.0 5,787,120 + PS417_26800 0.33 +0.0 5,787,132 + PS417_26800 0.34 -1.2 5,787,208 - PS417_26800 0.42 +0.7 5,787,216 + PS417_26800 0.42 -0.6 5,787,216 + PS417_26800 0.42 +0.1 5,787,217 - PS417_26800 0.42 -0.3 5,787,217 - PS417_26800 0.42 -1.3 5,787,217 - PS417_26800 0.42 -0.6 5,787,217 - PS417_26800 0.42 +0.4 5,787,409 + PS417_26800 0.61 -1.0 5,787,409 + PS417_26800 0.61 +0.0 5,787,410 - PS417_26800 0.61 -1.1 5,787,494 - PS417_26800 0.69 +0.8 5,787,546 - PS417_26800 0.75 -0.6
Or see this region's nucleotide sequence