Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26255 and PS417_26260 are separated by 41 nucleotides PS417_26260 and PS417_26265 are separated by 120 nucleotides PS417_26265 and PS417_26270 are separated by 31 nucleotides
PS417_26255: PS417_26255 - hypothetical protein, at 5,676,051 to 5,676,452
_26255
PS417_26260: PS417_26260 - hypothetical protein, at 5,676,494 to 5,676,910
_26260
PS417_26265: PS417_26265 - hypothetical protein, at 5,677,031 to 5,677,216
_26265
PS417_26270: PS417_26270 - AraC family transcriptional regulator, at 5,677,248 to 5,678,192
_26270
Position (kb) 5677
5678 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5676.037 kb on + strand at 5676.171 kb on + strand, within PS417_26255 at 5676.171 kb on + strand at 5676.172 kb on - strand, within PS417_26255 at 5676.206 kb on + strand, within PS417_26255 at 5676.207 kb on - strand, within PS417_26255 at 5676.207 kb on - strand, within PS417_26255 at 5676.210 kb on + strand, within PS417_26255 at 5676.210 kb on + strand, within PS417_26255 at 5676.211 kb on - strand, within PS417_26255 at 5676.211 kb on - strand, within PS417_26255 at 5676.243 kb on + strand, within PS417_26255 at 5676.243 kb on + strand, within PS417_26255 at 5676.244 kb on - strand, within PS417_26255 at 5676.450 kb on + strand at 5676.450 kb on + strand at 5676.451 kb on - strand at 5676.490 kb on - strand at 5676.490 kb on - strand at 5676.860 kb on + strand, within PS417_26260 at 5676.861 kb on - strand, within PS417_26260 at 5676.861 kb on - strand at 5676.876 kb on - strand at 5676.876 kb on - strand at 5676.908 kb on + strand at 5676.908 kb on + strand at 5676.909 kb on - strand at 5677.195 kb on + strand, within PS417_26265 at 5677.209 kb on + strand at 5677.210 kb on - strand at 5677.210 kb on - strand at 5677.217 kb on - strand at 5677.232 kb on + strand at 5677.233 kb on - strand at 5677.233 kb on - strand at 5677.236 kb on + strand at 5677.236 kb on + strand at 5677.237 kb on - strand at 5677.237 kb on - strand at 5677.346 kb on + strand, within PS417_26270 at 5677.347 kb on - strand, within PS417_26270 at 5677.347 kb on - strand, within PS417_26270 at 5677.417 kb on + strand, within PS417_26270 at 5677.417 kb on + strand, within PS417_26270 at 5678.139 kb on - strand at 5678.177 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days remove 5,676,037 + +0.2 5,676,171 + PS417_26255 0.30 +0.4 5,676,171 + +2.0 5,676,172 - PS417_26255 0.30 +0.0 5,676,206 + PS417_26255 0.39 +0.7 5,676,207 - PS417_26255 0.39 +0.3 5,676,207 - PS417_26255 0.39 +0.1 5,676,210 + PS417_26255 0.40 -0.5 5,676,210 + PS417_26255 0.40 +0.8 5,676,211 - PS417_26255 0.40 -0.2 5,676,211 - PS417_26255 0.40 -0.1 5,676,243 + PS417_26255 0.48 +0.2 5,676,243 + PS417_26255 0.48 +1.2 5,676,244 - PS417_26255 0.48 -0.6 5,676,450 + +0.6 5,676,450 + -0.1 5,676,451 - -0.4 5,676,490 - +0.6 5,676,490 - -1.5 5,676,860 + PS417_26260 0.88 +0.3 5,676,861 - PS417_26260 0.88 +0.8 5,676,861 - +0.4 5,676,876 - -1.3 5,676,876 - -0.9 5,676,908 + -2.5 5,676,908 + -1.3 5,676,909 - -0.7 5,677,195 + PS417_26265 0.88 -0.9 5,677,209 + -0.0 5,677,210 - +0.3 5,677,210 - -1.9 5,677,217 - -0.4 5,677,232 + +1.0 5,677,233 - +0.3 5,677,233 - -1.1 5,677,236 + -2.2 5,677,236 + +0.1 5,677,237 - +0.2 5,677,237 - +0.3 5,677,346 + PS417_26270 0.10 +0.4 5,677,347 - PS417_26270 0.10 +0.0 5,677,347 - PS417_26270 0.10 -0.3 5,677,417 + PS417_26270 0.18 +0.7 5,677,417 + PS417_26270 0.18 -1.3 5,678,139 - -0.3 5,678,177 - +1.2
Or see this region's nucleotide sequence