Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02330 and PS417_02335 are separated by 55 nucleotides PS417_02335 and PS417_02340 are separated by 101 nucleotides
PS417_02330: PS417_02330 - FAD-dependent oxidoreductase, at 532,496 to 533,671
_02330
PS417_02335: PS417_02335 - multidrug DMT transporter, at 533,727 to 534,062
_02335
PS417_02340: PS417_02340 - LysR family transcriptional regulator, at 534,164 to 535,054
_02340
Position (kb) 533
534
535 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 533.706 kb on - strand at 533.707 kb on + strand at 533.708 kb on - strand at 533.708 kb on - strand at 533.824 kb on + strand, within PS417_02335 at 533.824 kb on + strand, within PS417_02335 at 533.825 kb on - strand, within PS417_02335 at 534.043 kb on + strand at 534.043 kb on + strand at 534.043 kb on + strand at 534.044 kb on - strand at 534.046 kb on + strand at 534.046 kb on + strand at 534.046 kb on + strand at 534.046 kb on + strand at 534.047 kb on - strand at 534.047 kb on - strand at 534.049 kb on + strand at 534.049 kb on + strand at 534.050 kb on - strand at 534.050 kb on - strand at 534.092 kb on - strand at 534.183 kb on + strand at 534.183 kb on + strand at 534.366 kb on + strand, within PS417_02340 at 534.527 kb on + strand, within PS417_02340 at 534.833 kb on + strand, within PS417_02340 at 534.834 kb on - strand, within PS417_02340 at 534.834 kb on - strand, within PS417_02340 at 534.889 kb on + strand, within PS417_02340
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days remove 533,706 - -1.8 533,707 + -0.5 533,708 - +1.5 533,708 - +1.7 533,824 + PS417_02335 0.29 -1.0 533,824 + PS417_02335 0.29 +2.3 533,825 - PS417_02335 0.29 +1.4 534,043 + -1.0 534,043 + +1.2 534,043 + -0.2 534,044 - -0.5 534,046 + +1.4 534,046 + +0.2 534,046 + -0.6 534,046 + -0.0 534,047 - -2.9 534,047 - +1.0 534,049 + -0.8 534,049 + -0.9 534,050 - -0.5 534,050 - +0.3 534,092 - -2.0 534,183 + +0.1 534,183 + -0.4 534,366 + PS417_02340 0.23 -0.3 534,527 + PS417_02340 0.41 -0.3 534,833 + PS417_02340 0.75 +1.5 534,834 - PS417_02340 0.75 -0.4 534,834 - PS417_02340 0.75 +3.6 534,889 + PS417_02340 0.81 +0.3
Or see this region's nucleotide sequence