Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22605 and PS417_22610 are separated by 23 nucleotides PS417_22610 and PS417_22615 are separated by 225 nucleotides PS417_22615 and PS417_22620 are separated by 173 nucleotides
PS417_22605: PS417_22605 - membrane protein, at 4,894,910 to 4,896,241
_22605
PS417_22610: PS417_22610 - pilus assembly protein PilZ, at 4,896,265 to 4,896,624
_22610
PS417_22615: PS417_22615 - hypothetical protein, at 4,896,850 to 4,897,224
_22615
PS417_22620: PS417_22620 - pyruvate kinase, at 4,897,398 to 4,898,849
_22620
Position (kb) 4896
4897 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4895.361 kb on + strand, within PS417_22605 at 4895.427 kb on + strand, within PS417_22605 at 4895.442 kb on + strand, within PS417_22605 at 4895.726 kb on + strand, within PS417_22605 at 4895.727 kb on - strand, within PS417_22605 at 4895.727 kb on - strand, within PS417_22605 at 4895.813 kb on - strand, within PS417_22605 at 4895.841 kb on + strand, within PS417_22605 at 4895.841 kb on + strand, within PS417_22605 at 4895.841 kb on + strand, within PS417_22605 at 4895.841 kb on + strand, within PS417_22605 at 4895.843 kb on + strand, within PS417_22605 at 4895.843 kb on + strand, within PS417_22605 at 4895.843 kb on + strand, within PS417_22605 at 4895.843 kb on + strand, within PS417_22605 at 4895.843 kb on + strand, within PS417_22605 at 4895.843 kb on + strand, within PS417_22605 at 4895.844 kb on - strand, within PS417_22605 at 4895.844 kb on - strand, within PS417_22605 at 4895.990 kb on - strand, within PS417_22605 at 4896.262 kb on + strand at 4896.262 kb on + strand at 4896.266 kb on + strand at 4896.267 kb on - strand at 4896.299 kb on + strand at 4896.299 kb on + strand at 4896.300 kb on - strand at 4896.329 kb on + strand, within PS417_22610 at 4896.329 kb on + strand, within PS417_22610 at 4896.368 kb on + strand, within PS417_22610 at 4896.368 kb on + strand, within PS417_22610 at 4896.368 kb on + strand, within PS417_22610 at 4896.568 kb on - strand, within PS417_22610 at 4896.832 kb on - strand at 4896.832 kb on - strand at 4896.834 kb on + strand at 4896.835 kb on - strand at 4896.835 kb on - strand at 4896.944 kb on + strand, within PS417_22615 at 4897.058 kb on + strand, within PS417_22615 at 4897.059 kb on - strand, within PS417_22615 at 4897.059 kb on - strand, within PS417_22615 at 4897.059 kb on - strand, within PS417_22615 at 4897.130 kb on + strand, within PS417_22615 at 4897.131 kb on - strand, within PS417_22615 at 4897.324 kb on + strand at 4897.344 kb on + strand at 4897.359 kb on + strand at 4897.359 kb on + strand at 4897.362 kb on + strand at 4897.362 kb on + strand at 4897.363 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days remove 4,895,361 + PS417_22605 0.34 +0.4 4,895,427 + PS417_22605 0.39 +0.1 4,895,442 + PS417_22605 0.40 +0.3 4,895,726 + PS417_22605 0.61 -0.4 4,895,727 - PS417_22605 0.61 +2.2 4,895,727 - PS417_22605 0.61 -0.0 4,895,813 - PS417_22605 0.68 -0.7 4,895,841 + PS417_22605 0.70 -0.0 4,895,841 + PS417_22605 0.70 +0.2 4,895,841 + PS417_22605 0.70 +0.4 4,895,841 + PS417_22605 0.70 -0.6 4,895,843 + PS417_22605 0.70 -1.4 4,895,843 + PS417_22605 0.70 -1.1 4,895,843 + PS417_22605 0.70 +0.9 4,895,843 + PS417_22605 0.70 -0.8 4,895,843 + PS417_22605 0.70 +1.4 4,895,843 + PS417_22605 0.70 +1.2 4,895,844 - PS417_22605 0.70 -1.6 4,895,844 - PS417_22605 0.70 +0.3 4,895,990 - PS417_22605 0.81 +5.7 4,896,262 + +0.5 4,896,262 + +0.6 4,896,266 + -0.6 4,896,267 - -1.3 4,896,299 + +0.0 4,896,299 + +1.3 4,896,300 - +0.8 4,896,329 + PS417_22610 0.18 +0.9 4,896,329 + PS417_22610 0.18 -0.8 4,896,368 + PS417_22610 0.29 +1.6 4,896,368 + PS417_22610 0.29 +0.7 4,896,368 + PS417_22610 0.29 -2.2 4,896,568 - PS417_22610 0.84 -0.0 4,896,832 - +0.7 4,896,832 - -0.7 4,896,834 + +1.0 4,896,835 - +1.5 4,896,835 - -0.0 4,896,944 + PS417_22615 0.25 +0.3 4,897,058 + PS417_22615 0.55 -0.8 4,897,059 - PS417_22615 0.56 +0.4 4,897,059 - PS417_22615 0.56 -0.0 4,897,059 - PS417_22615 0.56 +0.4 4,897,130 + PS417_22615 0.75 +2.9 4,897,131 - PS417_22615 0.75 +2.2 4,897,324 + +0.1 4,897,344 + +0.0 4,897,359 + +0.8 4,897,359 + +0.4 4,897,362 + -1.3 4,897,362 + -1.8 4,897,363 - -3.5
Or see this region's nucleotide sequence