Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22010 and PS417_22015 are separated by 133 nucleotides PS417_22015 and PS417_22020 are separated by 113 nucleotides PS417_22020 and PS417_22025 are separated by 166 nucleotides
PS417_22010: PS417_22010 - MFS transporter, at 4,771,742 to 4,773,154
_22010
PS417_22015: PS417_22015 - hypothetical protein, at 4,773,288 to 4,773,785
_22015
PS417_22020: PS417_22020 - pili assembly chaperone, at 4,773,899 to 4,775,218
_22020
PS417_22025: PS417_22025 - LysR family transcriptional regulator, at 4,775,385 to 4,776,254
_22025
Position (kb) 4773
4774
4775
4776 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 4773.213 kb on + strand at 4773.243 kb on - strand at 4773.524 kb on - strand, within PS417_22015 at 4773.571 kb on - strand, within PS417_22015 at 4774.213 kb on + strand, within PS417_22020 at 4774.214 kb on - strand, within PS417_22020 at 4774.476 kb on + strand, within PS417_22020 at 4774.476 kb on + strand, within PS417_22020 at 4774.477 kb on - strand, within PS417_22020 at 4774.477 kb on - strand, within PS417_22020 at 4774.510 kb on - strand, within PS417_22020 at 4774.510 kb on - strand, within PS417_22020 at 4774.609 kb on - strand, within PS417_22020 at 4774.609 kb on - strand, within PS417_22020 at 4774.680 kb on + strand, within PS417_22020 at 4774.875 kb on + strand, within PS417_22020 at 4774.875 kb on + strand, within PS417_22020 at 4774.875 kb on + strand, within PS417_22020 at 4774.876 kb on - strand, within PS417_22020 at 4774.876 kb on - strand, within PS417_22020 at 4774.992 kb on + strand, within PS417_22020 at 4775.320 kb on + strand at 4775.320 kb on + strand at 4775.320 kb on + strand at 4775.320 kb on + strand at 4775.320 kb on + strand at 4775.321 kb on - strand at 4775.322 kb on + strand at 4775.323 kb on - strand at 4775.356 kb on + strand at 4775.673 kb on + strand, within PS417_22025 at 4775.883 kb on - strand, within PS417_22025 at 4776.014 kb on + strand, within PS417_22025
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days remove 4,773,213 + +0.4 4,773,243 - +0.9 4,773,524 - PS417_22015 0.47 +0.1 4,773,571 - PS417_22015 0.57 +0.9 4,774,213 + PS417_22020 0.24 +1.2 4,774,214 - PS417_22020 0.24 -0.1 4,774,476 + PS417_22020 0.44 -1.6 4,774,476 + PS417_22020 0.44 +5.0 4,774,477 - PS417_22020 0.44 +0.2 4,774,477 - PS417_22020 0.44 +0.5 4,774,510 - PS417_22020 0.46 +0.8 4,774,510 - PS417_22020 0.46 -0.1 4,774,609 - PS417_22020 0.54 -0.8 4,774,609 - PS417_22020 0.54 +0.5 4,774,680 + PS417_22020 0.59 +1.4 4,774,875 + PS417_22020 0.74 -0.1 4,774,875 + PS417_22020 0.74 -0.0 4,774,875 + PS417_22020 0.74 -1.4 4,774,876 - PS417_22020 0.74 -0.4 4,774,876 - PS417_22020 0.74 -1.6 4,774,992 + PS417_22020 0.83 +0.2 4,775,320 + +0.2 4,775,320 + -0.4 4,775,320 + +6.0 4,775,320 + +0.8 4,775,320 + -1.7 4,775,321 - +1.1 4,775,322 + +0.0 4,775,323 - +0.5 4,775,356 + +0.1 4,775,673 + PS417_22025 0.33 +1.4 4,775,883 - PS417_22025 0.57 -1.1 4,776,014 + PS417_22025 0.72 +1.1
Or see this region's nucleotide sequence