Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18735 and PS417_18740 are separated by 21 nucleotides PS417_18740 and PS417_18745 overlap by 4 nucleotides PS417_18745 and PS417_18750 are separated by 50 nucleotides PS417_18750 and PS417_18755 overlap by 1 nucleotides PS417_18755 and PS417_18760 are separated by 130 nucleotides
PS417_18735: PS417_18735 - histidinol phosphatase, at 4,066,858 to 4,067,622
_18735
PS417_18740: PS417_18740 - acetyltransferase, at 4,067,644 to 4,068,141
_18740
PS417_18745: PS417_18745 - hypothetical protein, at 4,068,138 to 4,068,362
_18745
PS417_18750: PS417_18750 - esterase, at 4,068,413 to 4,069,339
_18750
PS417_18755: PS417_18755 - CrtK, at 4,069,339 to 4,069,779
_18755
PS417_18760: PS417_18760 - hypothetical protein, at 4,069,910 to 4,070,479
_18760
Position (kb) 4068
4069
4070 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4067.509 kb on - strand, within PS417_18735 at 4067.569 kb on + strand at 4067.570 kb on - strand at 4067.570 kb on - strand at 4067.662 kb on - strand at 4067.765 kb on + strand at 4067.766 kb on - strand, within PS417_18740 at 4067.790 kb on + strand, within PS417_18740 at 4067.894 kb on + strand, within PS417_18740 at 4068.100 kb on - strand at 4068.123 kb on + strand at 4068.340 kb on + strand at 4068.341 kb on - strand at 4068.341 kb on - strand at 4068.341 kb on - strand at 4068.341 kb on - strand at 4068.352 kb on + strand at 4068.353 kb on - strand at 4068.363 kb on - strand at 4068.414 kb on + strand at 4068.445 kb on + strand at 4068.459 kb on + strand at 4068.460 kb on - strand at 4068.499 kb on + strand at 4068.500 kb on - strand at 4068.636 kb on + strand, within PS417_18750 at 4068.731 kb on + strand, within PS417_18750 at 4068.731 kb on + strand, within PS417_18750 at 4068.790 kb on - strand, within PS417_18750 at 4068.792 kb on + strand, within PS417_18750 at 4068.793 kb on - strand, within PS417_18750 at 4068.793 kb on - strand, within PS417_18750 at 4068.793 kb on - strand, within PS417_18750 at 4068.793 kb on - strand, within PS417_18750 at 4068.793 kb on - strand, within PS417_18750 at 4069.333 kb on - strand at 4069.634 kb on + strand, within PS417_18755 at 4069.720 kb on - strand, within PS417_18755 at 4069.820 kb on + strand at 4069.820 kb on + strand at 4069.820 kb on + strand at 4069.820 kb on + strand at 4069.821 kb on - strand at 4069.821 kb on - strand at 4069.821 kb on - strand at 4069.821 kb on - strand at 4069.821 kb on - strand at 4069.958 kb on - strand at 4069.958 kb on - strand at 4069.978 kb on + strand, within PS417_18760 at 4070.055 kb on + strand, within PS417_18760 at 4070.055 kb on + strand, within PS417_18760 at 4070.055 kb on + strand, within PS417_18760 at 4070.289 kb on + strand, within PS417_18760 at 4070.302 kb on - strand, within PS417_18760
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days remove 4,067,509 - PS417_18735 0.85 -1.6 4,067,569 + -0.6 4,067,570 - -0.6 4,067,570 - -2.7 4,067,662 - +0.1 4,067,765 + +0.8 4,067,766 - PS417_18740 0.24 +0.4 4,067,790 + PS417_18740 0.29 -0.3 4,067,894 + PS417_18740 0.50 +3.6 4,068,100 - +0.3 4,068,123 + -0.4 4,068,340 + -0.1 4,068,341 - +0.4 4,068,341 - +1.1 4,068,341 - +0.5 4,068,341 - +1.1 4,068,352 + -0.1 4,068,353 - -1.5 4,068,363 - -0.3 4,068,414 + -1.4 4,068,445 + +0.8 4,068,459 + -0.0 4,068,460 - -0.8 4,068,499 + +0.7 4,068,500 - -0.4 4,068,636 + PS417_18750 0.24 -0.7 4,068,731 + PS417_18750 0.34 -0.8 4,068,731 + PS417_18750 0.34 -0.4 4,068,790 - PS417_18750 0.41 -1.4 4,068,792 + PS417_18750 0.41 -1.8 4,068,793 - PS417_18750 0.41 -1.1 4,068,793 - PS417_18750 0.41 +0.7 4,068,793 - PS417_18750 0.41 -0.2 4,068,793 - PS417_18750 0.41 +0.9 4,068,793 - PS417_18750 0.41 +2.0 4,069,333 - -2.3 4,069,634 + PS417_18755 0.67 -0.7 4,069,720 - PS417_18755 0.86 -1.1 4,069,820 + -0.3 4,069,820 + -0.4 4,069,820 + -0.8 4,069,820 + -2.2 4,069,821 - +0.9 4,069,821 - -0.4 4,069,821 - +1.3 4,069,821 - +1.5 4,069,821 - -0.4 4,069,958 - +3.6 4,069,958 - +0.5 4,069,978 + PS417_18760 0.12 -0.0 4,070,055 + PS417_18760 0.25 +0.5 4,070,055 + PS417_18760 0.25 +0.4 4,070,055 + PS417_18760 0.25 -1.5 4,070,289 + PS417_18760 0.66 -0.6 4,070,302 - PS417_18760 0.69 -1.2
Or see this region's nucleotide sequence