Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01810 and PS417_01815 overlap by 8 nucleotides PS417_01815 and PS417_01820 are separated by 16 nucleotides PS417_01820 and PS417_01825 are separated by 182 nucleotides
PS417_01810: PS417_01810 - ABC transporter permease, at 404,012 to 404,971
_01810
PS417_01815: PS417_01815 - peptide ABC transporter ATP-binding protein, at 404,964 to 405,698
_01815
PS417_01820: PS417_01820 - chemotaxis protein, at 405,715 to 407,622
_01820
PS417_01825: PS417_01825 - chemotaxis protein, at 407,805 to 409,721
_01825
Position (kb) 405
406
407
408 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 404.773 kb on + strand, within PS417_01810 at 404.773 kb on + strand, within PS417_01810 at 404.774 kb on - strand, within PS417_01810 at 404.775 kb on + strand, within PS417_01810 at 404.776 kb on - strand, within PS417_01810 at 404.900 kb on + strand at 404.900 kb on + strand at 404.987 kb on - strand at 404.987 kb on - strand at 405.249 kb on - strand, within PS417_01815 at 405.249 kb on - strand, within PS417_01815 at 405.697 kb on - strand at 405.838 kb on + strand at 405.838 kb on + strand at 406.001 kb on + strand, within PS417_01820 at 406.002 kb on - strand, within PS417_01820 at 406.464 kb on + strand, within PS417_01820 at 406.700 kb on - strand, within PS417_01820 at 406.700 kb on - strand, within PS417_01820 at 406.890 kb on + strand, within PS417_01820 at 406.890 kb on + strand, within PS417_01820 at 406.936 kb on + strand, within PS417_01820 at 407.034 kb on - strand, within PS417_01820 at 407.301 kb on - strand, within PS417_01820 at 407.344 kb on - strand, within PS417_01820 at 407.344 kb on - strand, within PS417_01820 at 407.383 kb on - strand, within PS417_01820 at 407.489 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days remove 404,773 + PS417_01810 0.79 -0.3 404,773 + PS417_01810 0.79 +1.8 404,774 - PS417_01810 0.79 -2.2 404,775 + PS417_01810 0.79 +0.4 404,776 - PS417_01810 0.80 -0.9 404,900 + -0.0 404,900 + -1.2 404,987 - +0.3 404,987 - -0.8 405,249 - PS417_01815 0.39 +0.7 405,249 - PS417_01815 0.39 +0.0 405,697 - -0.3 405,838 + +0.3 405,838 + +0.2 406,001 + PS417_01820 0.15 +0.4 406,002 - PS417_01820 0.15 +0.7 406,464 + PS417_01820 0.39 +0.4 406,700 - PS417_01820 0.52 -0.0 406,700 - PS417_01820 0.52 -0.1 406,890 + PS417_01820 0.62 -1.1 406,890 + PS417_01820 0.62 +0.9 406,936 + PS417_01820 0.64 -1.6 407,034 - PS417_01820 0.69 -0.4 407,301 - PS417_01820 0.83 +3.9 407,344 - PS417_01820 0.85 -0.9 407,344 - PS417_01820 0.85 +0.3 407,383 - PS417_01820 0.87 -0.2 407,489 + -0.1
Or see this region's nucleotide sequence