Strain Fitness in Pseudomonas simiae WCS417 around PS417_13060

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13050 and PS417_13055 overlap by 4 nucleotidesPS417_13055 and PS417_13060 are separated by 104 nucleotidesPS417_13060 and PS417_13065 are separated by 218 nucleotides PS417_13050: PS417_13050 - N-acetylglucosamine-6-sulfatase, at 2,852,644 to 2,853,162 _13050 PS417_13055: PS417_13055 - aminotransferase, at 2,853,159 to 2,853,722 _13055 PS417_13060: PS417_13060 - chemotaxis protein, at 2,853,827 to 2,855,461 _13060 PS417_13065: PS417_13065 - UDP pyrophosphate phosphatase, at 2,855,680 to 2,856,510 _13065 Position (kb) 2853 2854 2855 2856Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2852.938 kb on - strand, within PS417_13050at 2853.027 kb on + strand, within PS417_13050at 2853.056 kb on + strand, within PS417_13050at 2853.124 kb on - strandat 2853.124 kb on - strandat 2853.259 kb on + strand, within PS417_13055at 2853.539 kb on - strand, within PS417_13055at 2853.614 kb on - strand, within PS417_13055at 2854.322 kb on + strand, within PS417_13060at 2854.525 kb on - strand, within PS417_13060at 2854.525 kb on - strandat 2854.819 kb on + strand, within PS417_13060at 2854.925 kb on + strand, within PS417_13060at 2854.925 kb on + strand, within PS417_13060at 2854.930 kb on - strand, within PS417_13060at 2854.930 kb on - strand, within PS417_13060at 2854.978 kb on - strand, within PS417_13060at 2854.978 kb on - strand, within PS417_13060at 2854.978 kb on - strand, within PS417_13060at 2854.978 kb on - strand, within PS417_13060at 2855.184 kb on + strand, within PS417_13060at 2855.184 kb on + strand, within PS417_13060at 2855.281 kb on - strand, within PS417_13060at 2855.377 kb on + strandat 2855.443 kb on + strandat 2855.443 kb on + strandat 2855.444 kb on - strandat 2855.556 kb on + strandat 2855.557 kb on - strandat 2855.657 kb on - strandat 2855.928 kb on + strand, within PS417_13065at 2856.001 kb on + strand, within PS417_13065at 2856.002 kb on - strand, within PS417_13065at 2856.284 kb on - strand, within PS417_13065at 2856.415 kb on + strand, within PS417_13065at 2856.416 kb on - strand, within PS417_13065at 2856.416 kb on - strandat 2856.452 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
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2,852,938 - PS417_13050 0.57 +0.1
2,853,027 + PS417_13050 0.74 +0.2
2,853,056 + PS417_13050 0.79 -2.2
2,853,124 - -0.1
2,853,124 - -0.6
2,853,259 + PS417_13055 0.18 +2.0
2,853,539 - PS417_13055 0.67 +0.3
2,853,614 - PS417_13055 0.81 -0.5
2,854,322 + PS417_13060 0.30 -0.4
2,854,525 - PS417_13060 0.43 -1.7
2,854,525 - -1.6
2,854,819 + PS417_13060 0.61 +0.5
2,854,925 + PS417_13060 0.67 +0.1
2,854,925 + PS417_13060 0.67 -0.0
2,854,930 - PS417_13060 0.67 -0.6
2,854,930 - PS417_13060 0.67 -3.0
2,854,978 - PS417_13060 0.70 +0.8
2,854,978 - PS417_13060 0.70 -0.3
2,854,978 - PS417_13060 0.70 -0.6
2,854,978 - PS417_13060 0.70 +0.4
2,855,184 + PS417_13060 0.83 -0.4
2,855,184 + PS417_13060 0.83 -0.1
2,855,281 - PS417_13060 0.89 -0.5
2,855,377 + -0.9
2,855,443 + +0.2
2,855,443 + -1.3
2,855,444 - -0.3
2,855,556 + -0.8
2,855,557 - -1.0
2,855,657 - +0.1
2,855,928 + PS417_13065 0.30 +1.6
2,856,001 + PS417_13065 0.39 -0.7
2,856,002 - PS417_13065 0.39 +0.5
2,856,284 - PS417_13065 0.73 -0.7
2,856,415 + PS417_13065 0.88 -0.8
2,856,416 - PS417_13065 0.89 -0.0
2,856,416 - -0.0
2,856,452 + -1.4

Or see this region's nucleotide sequence