Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13050 and PS417_13055 overlap by 4 nucleotides PS417_13055 and PS417_13060 are separated by 104 nucleotides PS417_13060 and PS417_13065 are separated by 218 nucleotides
PS417_13050: PS417_13050 - N-acetylglucosamine-6-sulfatase, at 2,852,644 to 2,853,162
_13050
PS417_13055: PS417_13055 - aminotransferase, at 2,853,159 to 2,853,722
_13055
PS417_13060: PS417_13060 - chemotaxis protein, at 2,853,827 to 2,855,461
_13060
PS417_13065: PS417_13065 - UDP pyrophosphate phosphatase, at 2,855,680 to 2,856,510
_13065
Position (kb)
2853
2854
2855
2856 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2852.938 kb on - strand, within PS417_13050 at 2853.027 kb on + strand, within PS417_13050 at 2853.056 kb on + strand, within PS417_13050 at 2853.124 kb on - strand at 2853.124 kb on - strand at 2853.259 kb on + strand, within PS417_13055 at 2853.539 kb on - strand, within PS417_13055 at 2853.614 kb on - strand, within PS417_13055 at 2854.322 kb on + strand, within PS417_13060 at 2854.525 kb on - strand, within PS417_13060 at 2854.525 kb on - strand at 2854.819 kb on + strand, within PS417_13060 at 2854.925 kb on + strand, within PS417_13060 at 2854.925 kb on + strand, within PS417_13060 at 2854.930 kb on - strand, within PS417_13060 at 2854.930 kb on - strand, within PS417_13060 at 2854.978 kb on - strand, within PS417_13060 at 2854.978 kb on - strand, within PS417_13060 at 2854.978 kb on - strand, within PS417_13060 at 2854.978 kb on - strand, within PS417_13060 at 2855.184 kb on + strand, within PS417_13060 at 2855.184 kb on + strand, within PS417_13060 at 2855.281 kb on - strand, within PS417_13060 at 2855.377 kb on + strand at 2855.443 kb on + strand at 2855.443 kb on + strand at 2855.444 kb on - strand at 2855.556 kb on + strand at 2855.557 kb on - strand at 2855.657 kb on - strand at 2855.928 kb on + strand, within PS417_13065 at 2856.001 kb on + strand, within PS417_13065 at 2856.002 kb on - strand, within PS417_13065 at 2856.284 kb on - strand, within PS417_13065 at 2856.415 kb on + strand, within PS417_13065 at 2856.416 kb on - strand, within PS417_13065 at 2856.416 kb on - strand at 2856.452 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days remove 2,852,938 - PS417_13050 0.57 +0.1 2,853,027 + PS417_13050 0.74 +0.2 2,853,056 + PS417_13050 0.79 -2.2 2,853,124 - -0.1 2,853,124 - -0.6 2,853,259 + PS417_13055 0.18 +2.0 2,853,539 - PS417_13055 0.67 +0.3 2,853,614 - PS417_13055 0.81 -0.5 2,854,322 + PS417_13060 0.30 -0.4 2,854,525 - PS417_13060 0.43 -1.7 2,854,525 - -1.6 2,854,819 + PS417_13060 0.61 +0.5 2,854,925 + PS417_13060 0.67 +0.1 2,854,925 + PS417_13060 0.67 -0.0 2,854,930 - PS417_13060 0.67 -0.6 2,854,930 - PS417_13060 0.67 -3.0 2,854,978 - PS417_13060 0.70 +0.8 2,854,978 - PS417_13060 0.70 -0.3 2,854,978 - PS417_13060 0.70 -0.6 2,854,978 - PS417_13060 0.70 +0.4 2,855,184 + PS417_13060 0.83 -0.4 2,855,184 + PS417_13060 0.83 -0.1 2,855,281 - PS417_13060 0.89 -0.5 2,855,377 + -0.9 2,855,443 + +0.2 2,855,443 + -1.3 2,855,444 - -0.3 2,855,556 + -0.8 2,855,557 - -1.0 2,855,657 - +0.1 2,855,928 + PS417_13065 0.30 +1.6 2,856,001 + PS417_13065 0.39 -0.7 2,856,002 - PS417_13065 0.39 +0.5 2,856,284 - PS417_13065 0.73 -0.7 2,856,415 + PS417_13065 0.88 -0.8 2,856,416 - PS417_13065 0.89 -0.0 2,856,416 - -0.0 2,856,452 + -1.4
Or see this region's nucleotide sequence