Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09070 and PS417_09075 are separated by 114 nucleotides PS417_09075 and PS417_09080 are separated by 37 nucleotides
PS417_09070: PS417_09070 - GntR family transcriptional regulator, at 1,974,088 to 1,975,500
_09070
PS417_09075: PS417_09075 - chemotaxis protein, at 1,975,615 to 1,977,582
_09075
PS417_09080: PS417_09080 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 1,977,620 to 1,978,432
_09080
Position (kb)
1975
1976
1977
1978 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1974.994 kb on + strand, within PS417_09070 at 1974.994 kb on + strand, within PS417_09070 at 1974.995 kb on - strand, within PS417_09070 at 1975.037 kb on + strand, within PS417_09070 at 1975.043 kb on - strand, within PS417_09070 at 1975.159 kb on + strand, within PS417_09070 at 1975.212 kb on + strand, within PS417_09070 at 1975.213 kb on - strand, within PS417_09070 at 1975.269 kb on + strand, within PS417_09070 at 1975.269 kb on + strand, within PS417_09070 at 1975.296 kb on - strand, within PS417_09070 at 1975.498 kb on + strand at 1975.689 kb on - strand at 1975.794 kb on - strand at 1975.944 kb on - strand, within PS417_09075 at 1975.944 kb on - strand, within PS417_09075 at 1976.207 kb on + strand, within PS417_09075 at 1976.208 kb on - strand, within PS417_09075 at 1976.208 kb on - strand, within PS417_09075 at 1976.208 kb on - strand, within PS417_09075 at 1976.208 kb on - strand at 1976.208 kb on - strand, within PS417_09075 at 1976.208 kb on - strand, within PS417_09075 at 1976.390 kb on - strand, within PS417_09075 at 1976.399 kb on + strand, within PS417_09075 at 1976.476 kb on + strand, within PS417_09075 at 1977.066 kb on + strand, within PS417_09075 at 1977.067 kb on - strand, within PS417_09075 at 1977.194 kb on + strand, within PS417_09075 at 1977.498 kb on + strand at 1977.558 kb on + strand at 1977.559 kb on - strand at 1977.688 kb on + strand at 1977.831 kb on - strand, within PS417_09080 at 1977.831 kb on - strand, within PS417_09080 at 1977.831 kb on - strand, within PS417_09080 at 1977.831 kb on - strand, within PS417_09080 at 1977.831 kb on - strand, within PS417_09080 at 1977.898 kb on - strand, within PS417_09080 at 1977.927 kb on + strand at 1977.927 kb on + strand at 1978.038 kb on + strand, within PS417_09080 at 1978.074 kb on + strand, within PS417_09080 at 1978.075 kb on - strand, within PS417_09080 at 1978.075 kb on - strand, within PS417_09080 at 1978.141 kb on + strand, within PS417_09080 at 1978.350 kb on + strand, within PS417_09080 at 1978.350 kb on + strand, within PS417_09080 at 1978.351 kb on - strand at 1978.391 kb on + strand at 1978.456 kb on + strand at 1978.457 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days remove 1,974,994 + PS417_09070 0.64 -0.1 1,974,994 + PS417_09070 0.64 -0.0 1,974,995 - PS417_09070 0.64 +0.3 1,975,037 + PS417_09070 0.67 +1.4 1,975,043 - PS417_09070 0.68 -0.8 1,975,159 + PS417_09070 0.76 +0.2 1,975,212 + PS417_09070 0.80 +0.4 1,975,213 - PS417_09070 0.80 -0.4 1,975,269 + PS417_09070 0.84 -0.7 1,975,269 + PS417_09070 0.84 +1.5 1,975,296 - PS417_09070 0.85 -1.1 1,975,498 + -0.4 1,975,689 - -1.1 1,975,794 - +2.4 1,975,944 - PS417_09075 0.17 -0.2 1,975,944 - PS417_09075 0.17 -0.4 1,976,207 + PS417_09075 0.30 -0.4 1,976,208 - PS417_09075 0.30 +0.2 1,976,208 - PS417_09075 0.30 -1.0 1,976,208 - PS417_09075 0.30 +0.1 1,976,208 - +0.1 1,976,208 - PS417_09075 0.30 +2.2 1,976,208 - PS417_09075 0.30 -1.0 1,976,390 - PS417_09075 0.39 +0.6 1,976,399 + PS417_09075 0.40 -0.2 1,976,476 + PS417_09075 0.44 -0.3 1,977,066 + PS417_09075 0.74 +0.4 1,977,067 - PS417_09075 0.74 -0.8 1,977,194 + PS417_09075 0.80 -1.6 1,977,498 + +0.1 1,977,558 + -2.2 1,977,559 - +1.2 1,977,688 + -0.0 1,977,831 - PS417_09080 0.26 -0.5 1,977,831 - PS417_09080 0.26 -0.0 1,977,831 - PS417_09080 0.26 +0.9 1,977,831 - PS417_09080 0.26 +0.9 1,977,831 - PS417_09080 0.26 -0.0 1,977,898 - PS417_09080 0.34 -0.3 1,977,927 + +0.3 1,977,927 + +1.9 1,978,038 + PS417_09080 0.51 -0.0 1,978,074 + PS417_09080 0.56 -1.8 1,978,075 - PS417_09080 0.56 -0.3 1,978,075 - PS417_09080 0.56 +0.0 1,978,141 + PS417_09080 0.64 -0.6 1,978,350 + PS417_09080 0.90 -0.2 1,978,350 + PS417_09080 0.90 -1.2 1,978,351 - +0.2 1,978,391 + +0.8 1,978,456 + +0.4 1,978,457 - +0.1
Or see this region's nucleotide sequence