Strain Fitness in Pseudomonas simiae WCS417 around PS417_09075

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09070 and PS417_09075 are separated by 114 nucleotidesPS417_09075 and PS417_09080 are separated by 37 nucleotides PS417_09070: PS417_09070 - GntR family transcriptional regulator, at 1,974,088 to 1,975,500 _09070 PS417_09075: PS417_09075 - chemotaxis protein, at 1,975,615 to 1,977,582 _09075 PS417_09080: PS417_09080 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 1,977,620 to 1,978,432 _09080 Position (kb) 1975 1976 1977 1978Strain fitness (log2 ratio) -2 -1 0 1 2at 1974.994 kb on + strand, within PS417_09070at 1974.994 kb on + strand, within PS417_09070at 1974.995 kb on - strand, within PS417_09070at 1975.037 kb on + strand, within PS417_09070at 1975.043 kb on - strand, within PS417_09070at 1975.159 kb on + strand, within PS417_09070at 1975.212 kb on + strand, within PS417_09070at 1975.213 kb on - strand, within PS417_09070at 1975.269 kb on + strand, within PS417_09070at 1975.269 kb on + strand, within PS417_09070at 1975.296 kb on - strand, within PS417_09070at 1975.498 kb on + strandat 1975.689 kb on - strandat 1975.794 kb on - strandat 1975.944 kb on - strand, within PS417_09075at 1975.944 kb on - strand, within PS417_09075at 1976.207 kb on + strand, within PS417_09075at 1976.208 kb on - strand, within PS417_09075at 1976.208 kb on - strand, within PS417_09075at 1976.208 kb on - strand, within PS417_09075at 1976.208 kb on - strandat 1976.208 kb on - strand, within PS417_09075at 1976.208 kb on - strand, within PS417_09075at 1976.390 kb on - strand, within PS417_09075at 1976.399 kb on + strand, within PS417_09075at 1976.476 kb on + strand, within PS417_09075at 1977.066 kb on + strand, within PS417_09075at 1977.067 kb on - strand, within PS417_09075at 1977.194 kb on + strand, within PS417_09075at 1977.498 kb on + strandat 1977.558 kb on + strandat 1977.559 kb on - strandat 1977.688 kb on + strandat 1977.831 kb on - strand, within PS417_09080at 1977.831 kb on - strand, within PS417_09080at 1977.831 kb on - strand, within PS417_09080at 1977.831 kb on - strand, within PS417_09080at 1977.831 kb on - strand, within PS417_09080at 1977.898 kb on - strand, within PS417_09080at 1977.927 kb on + strandat 1977.927 kb on + strandat 1978.038 kb on + strand, within PS417_09080at 1978.074 kb on + strand, within PS417_09080at 1978.075 kb on - strand, within PS417_09080at 1978.075 kb on - strand, within PS417_09080at 1978.141 kb on + strand, within PS417_09080at 1978.350 kb on + strand, within PS417_09080at 1978.350 kb on + strand, within PS417_09080at 1978.351 kb on - strandat 1978.391 kb on + strandat 1978.456 kb on + strandat 1978.457 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
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1,974,994 + PS417_09070 0.64 -0.1
1,974,994 + PS417_09070 0.64 -0.0
1,974,995 - PS417_09070 0.64 +0.3
1,975,037 + PS417_09070 0.67 +1.4
1,975,043 - PS417_09070 0.68 -0.8
1,975,159 + PS417_09070 0.76 +0.2
1,975,212 + PS417_09070 0.80 +0.4
1,975,213 - PS417_09070 0.80 -0.4
1,975,269 + PS417_09070 0.84 -0.7
1,975,269 + PS417_09070 0.84 +1.5
1,975,296 - PS417_09070 0.85 -1.1
1,975,498 + -0.4
1,975,689 - -1.1
1,975,794 - +2.4
1,975,944 - PS417_09075 0.17 -0.2
1,975,944 - PS417_09075 0.17 -0.4
1,976,207 + PS417_09075 0.30 -0.4
1,976,208 - PS417_09075 0.30 +0.2
1,976,208 - PS417_09075 0.30 -1.0
1,976,208 - PS417_09075 0.30 +0.1
1,976,208 - +0.1
1,976,208 - PS417_09075 0.30 +2.2
1,976,208 - PS417_09075 0.30 -1.0
1,976,390 - PS417_09075 0.39 +0.6
1,976,399 + PS417_09075 0.40 -0.2
1,976,476 + PS417_09075 0.44 -0.3
1,977,066 + PS417_09075 0.74 +0.4
1,977,067 - PS417_09075 0.74 -0.8
1,977,194 + PS417_09075 0.80 -1.6
1,977,498 + +0.1
1,977,558 + -2.2
1,977,559 - +1.2
1,977,688 + -0.0
1,977,831 - PS417_09080 0.26 -0.5
1,977,831 - PS417_09080 0.26 -0.0
1,977,831 - PS417_09080 0.26 +0.9
1,977,831 - PS417_09080 0.26 +0.9
1,977,831 - PS417_09080 0.26 -0.0
1,977,898 - PS417_09080 0.34 -0.3
1,977,927 + +0.3
1,977,927 + +1.9
1,978,038 + PS417_09080 0.51 -0.0
1,978,074 + PS417_09080 0.56 -1.8
1,978,075 - PS417_09080 0.56 -0.3
1,978,075 - PS417_09080 0.56 +0.0
1,978,141 + PS417_09080 0.64 -0.6
1,978,350 + PS417_09080 0.90 -0.2
1,978,350 + PS417_09080 0.90 -1.2
1,978,351 - +0.2
1,978,391 + +0.8
1,978,456 + +0.4
1,978,457 - +0.1

Or see this region's nucleotide sequence