Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00810 and PS417_00815 overlap by 4 nucleotides PS417_00815 and PS417_00820 are separated by 291 nucleotides PS417_00820 and PS417_00825 are separated by 890 nucleotides
PS417_00810: PS417_00810 - RNA polymerase sigma factor, at 179,799 to 180,371
_00810
PS417_00815: PS417_00815 - hypothetical protein, at 180,368 to 180,961
_00815
PS417_00820: PS417_00820 - hypothetical protein, at 181,253 to 181,504
_00820
PS417_00825: PS417_00825 - recombinase RecF, at 182,395 to 183,564
_00825
Position (kb) 181
182 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 181.012 kb on + strand at 181.013 kb on - strand at 181.013 kb on - strand at 181.097 kb on + strand at 181.097 kb on + strand at 181.097 kb on + strand at 181.098 kb on - strand at 181.110 kb on - strand at 181.255 kb on - strand at 181.255 kb on - strand at 181.278 kb on - strand at 181.294 kb on - strand, within PS417_00820 at 181.307 kb on + strand, within PS417_00820 at 181.307 kb on + strand, within PS417_00820 at 181.307 kb on + strand, within PS417_00820 at 181.308 kb on - strand, within PS417_00820 at 181.308 kb on - strand, within PS417_00820 at 181.308 kb on - strand, within PS417_00820 at 181.308 kb on - strand at 181.308 kb on - strand, within PS417_00820 at 181.350 kb on - strand, within PS417_00820 at 181.361 kb on + strand, within PS417_00820 at 181.372 kb on + strand, within PS417_00820 at 181.373 kb on - strand, within PS417_00820 at 181.461 kb on - strand, within PS417_00820 at 181.478 kb on + strand, within PS417_00820 at 181.498 kb on + strand at 181.499 kb on - strand at 181.562 kb on + strand at 181.562 kb on + strand at 181.593 kb on + strand at 181.745 kb on + strand at 181.785 kb on + strand at 181.785 kb on + strand at 181.785 kb on + strand at 181.786 kb on - strand at 181.887 kb on + strand at 181.942 kb on + strand at 181.942 kb on + strand at 181.942 kb on + strand at 181.943 kb on - strand at 181.943 kb on - strand at 181.943 kb on - strand at 182.021 kb on + strand at 182.095 kb on - strand at 182.095 kb on - strand at 182.127 kb on + strand at 182.145 kb on + strand at 182.154 kb on - strand at 182.154 kb on - strand at 182.154 kb on - strand at 182.230 kb on - strand at 182.230 kb on - strand at 182.230 kb on - strand at 182.230 kb on - strand at 182.306 kb on + strand at 182.306 kb on + strand at 182.328 kb on - strand at 182.362 kb on + strand at 182.362 kb on + strand at 182.363 kb on - strand at 182.363 kb on - strand at 182.389 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days remove 181,012 + +2.9 181,013 - -1.5 181,013 - -1.0 181,097 + +0.1 181,097 + -0.6 181,097 + -1.3 181,098 - -0.1 181,110 - -0.5 181,255 - -0.0 181,255 - +0.2 181,278 - +0.4 181,294 - PS417_00820 0.16 -1.2 181,307 + PS417_00820 0.21 +0.1 181,307 + PS417_00820 0.21 +0.4 181,307 + PS417_00820 0.21 -0.7 181,308 - PS417_00820 0.22 -0.5 181,308 - PS417_00820 0.22 +0.2 181,308 - PS417_00820 0.22 +0.2 181,308 - -0.0 181,308 - PS417_00820 0.22 +0.0 181,350 - PS417_00820 0.38 -0.0 181,361 + PS417_00820 0.43 +0.3 181,372 + PS417_00820 0.47 +0.3 181,373 - PS417_00820 0.48 -0.6 181,461 - PS417_00820 0.83 -0.3 181,478 + PS417_00820 0.89 +0.4 181,498 + +1.0 181,499 - -0.7 181,562 + -1.7 181,562 + -2.6 181,593 + +0.2 181,745 + -0.4 181,785 + -0.7 181,785 + +1.6 181,785 + -0.6 181,786 - -0.9 181,887 + +0.9 181,942 + -0.7 181,942 + +0.8 181,942 + -0.2 181,943 - +0.6 181,943 - +0.2 181,943 - -0.2 182,021 + -0.2 182,095 - -1.7 182,095 - +0.2 182,127 + -1.5 182,145 + -0.4 182,154 - +1.5 182,154 - +1.9 182,154 - -2.7 182,230 - -1.3 182,230 - +0.3 182,230 - -2.2 182,230 - -1.9 182,306 + -0.5 182,306 + -0.8 182,328 - +0.3 182,362 + +0.1 182,362 + +0.3 182,363 - +0.1 182,363 - -1.3 182,389 - +2.0
Or see this region's nucleotide sequence