Strain Fitness in Pseudomonas simiae WCS417 around PS417_04100

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04095 and PS417_04100 overlap by 8 nucleotidesPS417_04100 and PS417_04105 are separated by 111 nucleotides PS417_04095: PS417_04095 - histidine kinase, at 920,869 to 922,131 _04095 PS417_04100: PS417_04100 - chemotaxis protein CheY, at 922,124 to 922,684 _04100 PS417_04105: PS417_04105 - ABC transporter ATP-binding protein, at 922,796 to 924,520 _04105 Position (kb) 922 923Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 921.184 kb on + strand, within PS417_04095at 921.268 kb on + strand, within PS417_04095at 922.749 kb on - strandat 922.749 kb on - strandat 922.982 kb on + strand, within PS417_04105at 922.982 kb on + strand, within PS417_04105at 922.982 kb on + strand, within PS417_04105at 922.983 kb on - strand, within PS417_04105at 922.983 kb on - strand, within PS417_04105at 922.983 kb on - strand, within PS417_04105at 923.096 kb on + strand, within PS417_04105at 923.096 kb on + strand, within PS417_04105at 923.147 kb on + strand, within PS417_04105at 923.148 kb on - strand, within PS417_04105at 923.177 kb on + strand, within PS417_04105at 923.178 kb on - strand, within PS417_04105at 923.202 kb on - strand, within PS417_04105at 923.242 kb on + strand, within PS417_04105at 923.242 kb on + strand, within PS417_04105at 923.242 kb on + strand, within PS417_04105at 923.243 kb on - strand, within PS417_04105at 923.274 kb on + strand, within PS417_04105at 923.275 kb on - strandat 923.275 kb on - strand, within PS417_04105at 923.275 kb on - strand, within PS417_04105at 923.362 kb on + strand, within PS417_04105at 923.362 kb on + strand, within PS417_04105at 923.363 kb on - strandat 923.373 kb on - strand, within PS417_04105at 923.373 kb on - strand, within PS417_04105at 923.373 kb on - strand, within PS417_04105at 923.373 kb on - strand, within PS417_04105at 923.525 kb on - strand, within PS417_04105at 923.535 kb on - strand, within PS417_04105at 923.594 kb on - strand, within PS417_04105at 923.597 kb on + strand, within PS417_04105at 923.597 kb on + strand, within PS417_04105at 923.597 kb on + strand, within PS417_04105at 923.598 kb on - strand, within PS417_04105at 923.598 kb on - strand, within PS417_04105at 923.598 kb on - strand, within PS417_04105at 923.598 kb on - strand, within PS417_04105

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
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921,184 + PS417_04095 0.25 +0.2
921,268 + PS417_04095 0.32 +0.2
922,749 - +1.8
922,749 - +0.4
922,982 + PS417_04105 0.11 +0.3
922,982 + PS417_04105 0.11 +0.6
922,982 + PS417_04105 0.11 -0.5
922,983 - PS417_04105 0.11 -0.1
922,983 - PS417_04105 0.11 +1.0
922,983 - PS417_04105 0.11 -0.2
923,096 + PS417_04105 0.17 +0.6
923,096 + PS417_04105 0.17 -1.2
923,147 + PS417_04105 0.20 +0.1
923,148 - PS417_04105 0.20 +0.4
923,177 + PS417_04105 0.22 +0.6
923,178 - PS417_04105 0.22 +0.4
923,202 - PS417_04105 0.24 -0.3
923,242 + PS417_04105 0.26 -0.0
923,242 + PS417_04105 0.26 +0.6
923,242 + PS417_04105 0.26 -0.2
923,243 - PS417_04105 0.26 -0.5
923,274 + PS417_04105 0.28 +0.3
923,275 - +1.2
923,275 - PS417_04105 0.28 -1.1
923,275 - PS417_04105 0.28 -2.8
923,362 + PS417_04105 0.33 -2.0
923,362 + PS417_04105 0.33 -0.5
923,363 - +1.5
923,373 - PS417_04105 0.33 -0.4
923,373 - PS417_04105 0.33 +0.2
923,373 - PS417_04105 0.33 -0.1
923,373 - PS417_04105 0.33 -0.1
923,525 - PS417_04105 0.42 -1.5
923,535 - PS417_04105 0.43 -0.3
923,594 - PS417_04105 0.46 -0.7
923,597 + PS417_04105 0.46 +0.1
923,597 + PS417_04105 0.46 +0.1
923,597 + PS417_04105 0.46 -0.5
923,598 - PS417_04105 0.46 -0.2
923,598 - PS417_04105 0.46 -0.3
923,598 - PS417_04105 0.46 -0.2
923,598 - PS417_04105 0.46 -0.3

Or see this region's nucleotide sequence