Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03950 and PS417_03955 overlap by 54 nucleotides PS417_03955 and PS417_03960 are separated by 2 nucleotides PS417_03960 and PS417_03965 are separated by 293 nucleotides
PS417_03950: PS417_03950 - hypothetical protein, at 883,082 to 883,513
_03950
PS417_03955: PS417_03955 - hydrolase TatD, at 883,460 to 884,236
_03955
PS417_03960: PS417_03960 - transcriptional regulator, at 884,239 to 885,234
_03960
PS417_03965: PS417_03965 - fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components <small>(from data)</small>, at 885,528 to 888,386
_03965
Position (kb) 884
885
886 Strain fitness (log2 ratio) -2
-1
0
1 at 883.380 kb on + strand, within PS417_03950 at 883.380 kb on + strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.461 kb on + strand at 883.590 kb on + strand, within PS417_03955 at 883.629 kb on - strand, within PS417_03955 at 883.732 kb on - strand, within PS417_03955 at 883.932 kb on + strand, within PS417_03955 at 883.932 kb on + strand, within PS417_03955 at 884.118 kb on + strand, within PS417_03955 at 884.118 kb on + strand, within PS417_03955 at 884.118 kb on + strand, within PS417_03955 at 884.119 kb on - strand, within PS417_03955 at 884.119 kb on - strand, within PS417_03955 at 884.253 kb on + strand at 884.253 kb on + strand at 885.179 kb on + strand at 885.179 kb on + strand at 885.179 kb on + strand at 885.180 kb on - strand at 885.492 kb on + strand at 885.492 kb on + strand at 885.496 kb on + strand at 885.496 kb on + strand at 885.513 kb on - strand at 885.513 kb on - strand at 885.517 kb on - strand at 885.517 kb on - strand at 885.517 kb on - strand at 885.544 kb on + strand at 885.643 kb on - strand at 885.808 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days remove 883,380 + PS417_03950 0.69 -0.6 883,380 + PS417_03950 0.69 +0.8 883,381 - PS417_03950 0.69 -0.2 883,381 - PS417_03950 0.69 +0.4 883,381 - PS417_03950 0.69 +0.6 883,381 - PS417_03950 0.69 +1.4 883,381 - PS417_03950 0.69 +0.1 883,461 + -1.8 883,590 + PS417_03955 0.17 -1.0 883,629 - PS417_03955 0.22 +0.1 883,732 - PS417_03955 0.35 +0.7 883,932 + PS417_03955 0.61 +0.3 883,932 + PS417_03955 0.61 +0.5 884,118 + PS417_03955 0.85 -1.9 884,118 + PS417_03955 0.85 -0.8 884,118 + PS417_03955 0.85 +0.0 884,119 - PS417_03955 0.85 -1.1 884,119 - PS417_03955 0.85 +0.2 884,253 + -1.4 884,253 + -0.2 885,179 + -1.1 885,179 + -1.1 885,179 + -1.7 885,180 - -2.0 885,492 + +0.4 885,492 + -1.4 885,496 + -1.0 885,496 + -1.0 885,513 - -0.9 885,513 - -0.6 885,517 - -1.2 885,517 - -0.5 885,517 - -0.3 885,544 + -0.0 885,643 - -1.2 885,808 - +0.5
Or see this region's nucleotide sequence