Strain Fitness in Pseudomonas simiae WCS417 around PS417_03125

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03115 and PS417_03120 are separated by 58 nucleotidesPS417_03120 and PS417_03125 are separated by 28 nucleotidesPS417_03125 and PS417_03130 are separated by 172 nucleotides PS417_03115: PS417_03115 - pilus assembly protein, at 715,075 to 715,266 _03115 PS417_03120: PS417_03120 - histidine kinase, at 715,325 to 715,729 _03120 PS417_03125: PS417_03125 - potassium ABC transporter ATPase, at 715,758 to 717,440 _03125 PS417_03130: PS417_03130 - hypothetical protein, at 717,613 to 719,256 _03130 Position (kb) 715 716 717 718Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 714.796 kb on - strandat 714.824 kb on + strandat 714.846 kb on + strandat 714.846 kb on + strandat 714.948 kb on + strandat 714.959 kb on + strandat 714.970 kb on + strandat 715.029 kb on + strandat 715.029 kb on + strandat 715.029 kb on + strandat 715.033 kb on - strandat 715.033 kb on - strandat 715.102 kb on + strand, within PS417_03115at 715.102 kb on + strand, within PS417_03115at 715.102 kb on + strand, within PS417_03115at 715.102 kb on + strand, within PS417_03115at 715.102 kb on + strand, within PS417_03115at 715.103 kb on - strand, within PS417_03115at 715.131 kb on + strand, within PS417_03115at 715.132 kb on - strand, within PS417_03115at 715.278 kb on + strandat 715.278 kb on + strandat 715.278 kb on + strandat 715.279 kb on - strandat 715.279 kb on - strandat 715.279 kb on - strandat 715.511 kb on - strand, within PS417_03120at 715.511 kb on - strand, within PS417_03120at 715.511 kb on - strand, within PS417_03120at 715.624 kb on + strand, within PS417_03120at 715.625 kb on - strand, within PS417_03120at 715.667 kb on + strand, within PS417_03120at 715.667 kb on + strand, within PS417_03120at 715.858 kb on + strandat 715.859 kb on - strandat 715.859 kb on - strandat 715.859 kb on - strandat 715.861 kb on + strandat 715.862 kb on - strandat 715.862 kb on - strandat 715.862 kb on - strandat 715.904 kb on + strandat 715.904 kb on + strandat 715.904 kb on + strandat 715.904 kb on + strandat 715.905 kb on - strandat 715.905 kb on - strandat 715.905 kb on - strandat 715.963 kb on + strand, within PS417_03125at 715.963 kb on + strand, within PS417_03125at 715.963 kb on + strand, within PS417_03125at 715.963 kb on + strand, within PS417_03125at 715.963 kb on + strand, within PS417_03125at 715.963 kb on + strand, within PS417_03125at 715.964 kb on - strand, within PS417_03125at 715.964 kb on - strand, within PS417_03125at 716.002 kb on + strand, within PS417_03125at 716.002 kb on + strand, within PS417_03125at 716.003 kb on - strand, within PS417_03125at 716.003 kb on - strand, within PS417_03125at 716.008 kb on + strand, within PS417_03125at 716.009 kb on - strand, within PS417_03125at 716.009 kb on - strand, within PS417_03125at 716.009 kb on - strand, within PS417_03125at 716.009 kb on - strand, within PS417_03125at 716.020 kb on + strand, within PS417_03125at 716.020 kb on + strand, within PS417_03125at 716.020 kb on + strand, within PS417_03125at 716.020 kb on + strand, within PS417_03125at 716.021 kb on - strand, within PS417_03125at 716.134 kb on + strand, within PS417_03125at 716.402 kb on - strand, within PS417_03125at 716.635 kb on + strand, within PS417_03125at 716.648 kb on + strand, within PS417_03125at 716.649 kb on - strand, within PS417_03125at 716.678 kb on + strand, within PS417_03125at 716.992 kb on + strand, within PS417_03125at 717.002 kb on + strand, within PS417_03125at 717.003 kb on - strand, within PS417_03125at 717.004 kb on + strand, within PS417_03125at 717.004 kb on + strand, within PS417_03125at 717.005 kb on - strand, within PS417_03125at 717.080 kb on - strand, within PS417_03125at 717.166 kb on + strand, within PS417_03125at 717.397 kb on + strandat 717.417 kb on + strandat 717.440 kb on + strandat 717.440 kb on + strandat 717.544 kb on - strandat 717.544 kb on - strandat 717.572 kb on - strandat 717.641 kb on - strandat 717.772 kb on + strandat 718.116 kb on + strand, within PS417_03130at 718.117 kb on - strand, within PS417_03130at 718.264 kb on + strand, within PS417_03130at 718.265 kb on - strand, within PS417_03130at 718.265 kb on - strand, within PS417_03130

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
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714,796 - -0.1
714,824 + +1.4
714,846 + +0.7
714,846 + +0.3
714,948 + +0.8
714,959 + +1.9
714,970 + +0.2
715,029 + -0.5
715,029 + -0.2
715,029 + +0.9
715,033 - +0.1
715,033 - +0.5
715,102 + PS417_03115 0.14 -1.5
715,102 + PS417_03115 0.14 -3.8
715,102 + PS417_03115 0.14 +1.4
715,102 + PS417_03115 0.14 +0.7
715,102 + PS417_03115 0.14 +0.2
715,103 - PS417_03115 0.15 -0.7
715,131 + PS417_03115 0.29 -2.3
715,132 - PS417_03115 0.30 +0.8
715,278 + +0.7
715,278 + +1.3
715,278 + +0.6
715,279 - -0.2
715,279 - -0.2
715,279 - -1.0
715,511 - PS417_03120 0.46 -0.9
715,511 - PS417_03120 0.46 -0.3
715,511 - PS417_03120 0.46 +1.0
715,624 + PS417_03120 0.74 -1.1
715,625 - PS417_03120 0.74 -0.5
715,667 + PS417_03120 0.84 -2.4
715,667 + PS417_03120 0.84 -0.4
715,858 + -0.8
715,859 - +0.9
715,859 - +0.1
715,859 - -1.6
715,861 + +2.7
715,862 - -1.6
715,862 - +0.8
715,862 - +0.4
715,904 + +0.3
715,904 + +0.4
715,904 + +0.0
715,904 + -1.6
715,905 - -1.3
715,905 - +1.2
715,905 - -1.5
715,963 + PS417_03125 0.12 +3.9
715,963 + PS417_03125 0.12 +0.7
715,963 + PS417_03125 0.12 -0.1
715,963 + PS417_03125 0.12 -0.1
715,963 + PS417_03125 0.12 +0.8
715,963 + PS417_03125 0.12 +0.8
715,964 - PS417_03125 0.12 +0.3
715,964 - PS417_03125 0.12 -1.0
716,002 + PS417_03125 0.14 +0.1
716,002 + PS417_03125 0.14 +0.7
716,003 - PS417_03125 0.15 +0.1
716,003 - PS417_03125 0.15 +0.2
716,008 + PS417_03125 0.15 -0.4
716,009 - PS417_03125 0.15 +0.8
716,009 - PS417_03125 0.15 +1.0
716,009 - PS417_03125 0.15 +0.6
716,009 - PS417_03125 0.15 -0.6
716,020 + PS417_03125 0.16 +1.2
716,020 + PS417_03125 0.16 +0.5
716,020 + PS417_03125 0.16 +0.9
716,020 + PS417_03125 0.16 +0.3
716,021 - PS417_03125 0.16 +0.2
716,134 + PS417_03125 0.22 +0.2
716,402 - PS417_03125 0.38 +2.1
716,635 + PS417_03125 0.52 +1.0
716,648 + PS417_03125 0.53 +1.6
716,649 - PS417_03125 0.53 +0.5
716,678 + PS417_03125 0.55 -0.4
716,992 + PS417_03125 0.73 +0.1
717,002 + PS417_03125 0.74 +0.2
717,003 - PS417_03125 0.74 +0.3
717,004 + PS417_03125 0.74 +0.9
717,004 + PS417_03125 0.74 -0.3
717,005 - PS417_03125 0.74 +0.1
717,080 - PS417_03125 0.79 +0.0
717,166 + PS417_03125 0.84 +0.6
717,397 + -1.1
717,417 + -0.5
717,440 + -1.3
717,440 + +1.5
717,544 - -0.1
717,544 - +4.8
717,572 - -0.5
717,641 - -0.3
717,772 + +1.4
718,116 + PS417_03130 0.31 -0.8
718,117 - PS417_03130 0.31 +0.4
718,264 + PS417_03130 0.40 +1.0
718,265 - PS417_03130 0.40 +1.0
718,265 - PS417_03130 0.40 +0.5

Or see this region's nucleotide sequence