Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02920 and PS417_02925 overlap by 4 nucleotides PS417_02925 and PS417_02930 are separated by 163 nucleotides PS417_02930 and PS417_02935 are separated by 100 nucleotides
PS417_02920: PS417_02920 - hypothetical protein, at 666,381 to 667,160
_02920
PS417_02925: PS417_02925 - membrane protein, at 667,157 to 667,753
_02925
PS417_02930: PS417_02930 - histidine kinase, at 667,917 to 670,688
_02930
PS417_02935: PS417_02935 - phosphoribosylamine--glycine ligase, at 670,789 to 672,081
_02935
Position (kb) 667
668
669
670
671 Strain fitness (log2 ratio) -2
-1
0
1
2 at 666.969 kb on + strand, within PS417_02920 at 666.970 kb on - strand, within PS417_02920 at 666.970 kb on - strand, within PS417_02920 at 666.997 kb on + strand, within PS417_02920 at 666.998 kb on - strand, within PS417_02920 at 667.454 kb on + strand, within PS417_02925 at 667.455 kb on - strand, within PS417_02925 at 667.455 kb on - strand, within PS417_02925 at 667.455 kb on - strand, within PS417_02925 at 667.455 kb on - strand, within PS417_02925 at 667.588 kb on - strand, within PS417_02925 at 667.679 kb on - strand, within PS417_02925 at 667.708 kb on - strand at 667.848 kb on + strand at 667.848 kb on + strand at 667.911 kb on + strand at 670.704 kb on + strand at 670.705 kb on - strand at 670.705 kb on - strand at 670.705 kb on - strand at 670.705 kb on - strand at 670.721 kb on - strand at 670.724 kb on + strand at 670.725 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days remove 666,969 + PS417_02920 0.75 +0.0 666,970 - PS417_02920 0.76 +0.4 666,970 - PS417_02920 0.76 +0.1 666,997 + PS417_02920 0.79 -0.1 666,998 - PS417_02920 0.79 +0.5 667,454 + PS417_02925 0.50 -1.9 667,455 - PS417_02925 0.50 -1.5 667,455 - PS417_02925 0.50 -1.1 667,455 - PS417_02925 0.50 +1.7 667,455 - PS417_02925 0.50 -0.7 667,588 - PS417_02925 0.72 +0.6 667,679 - PS417_02925 0.87 +0.4 667,708 - -0.2 667,848 + -0.8 667,848 + +0.1 667,911 + -0.1 670,704 + -1.9 670,705 - +1.8 670,705 - +0.3 670,705 - +0.2 670,705 - +0.7 670,721 - +1.3 670,724 + -1.1 670,725 - +1.0
Or see this region's nucleotide sequence