Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26135 and PS417_26140 overlap by 1 nucleotides PS417_26140 and PS417_26145 are separated by 9 nucleotides PS417_26145 and PS417_26150 are separated by 171 nucleotides
PS417_26135: PS417_26135 - histidine kinase, at 5,648,119 to 5,649,558
_26135
PS417_26140: PS417_26140 - transcriptional regulator, at 5,649,558 to 5,650,226
_26140
PS417_26145: PS417_26145 - hypothetical protein, at 5,650,236 to 5,650,736
_26145
PS417_26150: PS417_26150 - acyltransferase, at 5,650,908 to 5,651,795
_26150
Position (kb) 5649
5650
5651 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5648.707 kb on - strand, within PS417_26135 at 5648.779 kb on + strand, within PS417_26135 at 5648.780 kb on - strand, within PS417_26135 at 5648.780 kb on - strand, within PS417_26135 at 5648.780 kb on - strand, within PS417_26135 at 5648.783 kb on + strand, within PS417_26135 at 5648.784 kb on - strand, within PS417_26135 at 5648.784 kb on - strand, within PS417_26135 at 5648.796 kb on - strand, within PS417_26135 at 5649.032 kb on + strand, within PS417_26135 at 5649.033 kb on - strand, within PS417_26135 at 5649.272 kb on + strand, within PS417_26135 at 5649.272 kb on + strand, within PS417_26135 at 5649.397 kb on - strand, within PS417_26135 at 5649.431 kb on - strand at 5649.431 kb on - strand at 5649.527 kb on + strand at 5649.528 kb on - strand at 5649.528 kb on - strand at 5649.577 kb on + strand at 5649.578 kb on - strand at 5649.578 kb on - strand at 5649.934 kb on + strand, within PS417_26140 at 5649.934 kb on + strand, within PS417_26140 at 5649.934 kb on + strand, within PS417_26140 at 5649.934 kb on + strand, within PS417_26140 at 5649.935 kb on - strand, within PS417_26140 at 5649.935 kb on - strand, within PS417_26140 at 5650.217 kb on + strand at 5650.261 kb on + strand at 5650.654 kb on + strand, within PS417_26145 at 5650.654 kb on + strand, within PS417_26145 at 5650.655 kb on - strand, within PS417_26145 at 5650.655 kb on - strand, within PS417_26145 at 5650.670 kb on - strand, within PS417_26145 at 5650.791 kb on + strand at 5650.791 kb on + strand at 5650.792 kb on - strand at 5650.792 kb on - strand at 5650.792 kb on - strand at 5650.792 kb on - strand at 5650.857 kb on + strand at 5650.949 kb on - strand at 5650.949 kb on - strand at 5651.031 kb on + strand, within PS417_26150 at 5651.032 kb on - strand, within PS417_26150 at 5651.032 kb on - strand, within PS417_26150 at 5651.032 kb on - strand, within PS417_26150 at 5651.151 kb on - strand, within PS417_26150 at 5651.158 kb on - strand, within PS417_26150
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days remove 5,648,707 - PS417_26135 0.41 +0.0 5,648,779 + PS417_26135 0.46 +0.1 5,648,780 - PS417_26135 0.46 -1.1 5,648,780 - PS417_26135 0.46 -0.8 5,648,780 - PS417_26135 0.46 -0.6 5,648,783 + PS417_26135 0.46 +0.0 5,648,784 - PS417_26135 0.46 -0.2 5,648,784 - PS417_26135 0.46 +0.1 5,648,796 - PS417_26135 0.47 -1.1 5,649,032 + PS417_26135 0.63 -0.1 5,649,033 - PS417_26135 0.63 -0.1 5,649,272 + PS417_26135 0.80 -0.1 5,649,272 + PS417_26135 0.80 -0.4 5,649,397 - PS417_26135 0.89 -1.8 5,649,431 - +0.2 5,649,431 - +0.6 5,649,527 + +0.3 5,649,528 - -1.5 5,649,528 - +2.9 5,649,577 + -0.4 5,649,578 - -0.6 5,649,578 - -1.6 5,649,934 + PS417_26140 0.56 +0.5 5,649,934 + PS417_26140 0.56 +0.0 5,649,934 + PS417_26140 0.56 +1.4 5,649,934 + PS417_26140 0.56 +0.4 5,649,935 - PS417_26140 0.56 +0.1 5,649,935 - PS417_26140 0.56 +0.3 5,650,217 + +1.9 5,650,261 + +2.4 5,650,654 + PS417_26145 0.83 -0.5 5,650,654 + PS417_26145 0.83 -0.4 5,650,655 - PS417_26145 0.84 -0.9 5,650,655 - PS417_26145 0.84 +0.5 5,650,670 - PS417_26145 0.87 -0.2 5,650,791 + +0.9 5,650,791 + -0.8 5,650,792 - -0.5 5,650,792 - -0.3 5,650,792 - -0.7 5,650,792 - +0.4 5,650,857 + +0.9 5,650,949 - -1.0 5,650,949 - -0.3 5,651,031 + PS417_26150 0.14 -0.5 5,651,032 - PS417_26150 0.14 +1.7 5,651,032 - PS417_26150 0.14 -1.8 5,651,032 - PS417_26150 0.14 -0.9 5,651,151 - PS417_26150 0.27 -0.1 5,651,158 - PS417_26150 0.28 +3.6
Or see this region's nucleotide sequence