Strain Fitness in Pseudomonas simiae WCS417 around PS417_23925

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23920 and PS417_23925 are separated by 105 nucleotidesPS417_23925 and PS417_23930 are separated by 16 nucleotidesPS417_23930 and PS417_23935 are separated by 57 nucleotides PS417_23920: PS417_23920 - glucose-6-phosphate isomerase, at 5,176,416 to 5,178,080 _23920 PS417_23925: PS417_23925 - acetyl-CoA synthetase, at 5,178,186 to 5,180,123 _23925 PS417_23930: PS417_23930 - histidine kinase, at 5,180,140 to 5,181,009 _23930 PS417_23935: PS417_23935 - SAM-dependent methyltransferase, at 5,181,067 to 5,182,083 _23935 Position (kb) 5178 5179 5180 5181Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 5178.054 kb on + strandat 5178.151 kb on - strandat 5178.255 kb on + strandat 5178.255 kb on + strandat 5178.255 kb on + strandat 5178.256 kb on - strandat 5178.256 kb on - strandat 5178.257 kb on + strandat 5178.258 kb on - strandat 5178.293 kb on + strandat 5178.417 kb on + strand, within PS417_23925at 5178.417 kb on + strandat 5178.418 kb on - strand, within PS417_23925at 5178.594 kb on + strand, within PS417_23925at 5178.594 kb on + strand, within PS417_23925at 5178.594 kb on + strand, within PS417_23925at 5178.595 kb on - strand, within PS417_23925at 5178.595 kb on - strand, within PS417_23925at 5178.595 kb on - strand, within PS417_23925at 5178.595 kb on - strand, within PS417_23925at 5178.705 kb on - strand, within PS417_23925at 5178.776 kb on + strandat 5178.776 kb on + strand, within PS417_23925at 5178.776 kb on + strand, within PS417_23925at 5178.777 kb on - strand, within PS417_23925at 5178.885 kb on + strand, within PS417_23925at 5178.885 kb on + strand, within PS417_23925at 5178.963 kb on + strandat 5178.963 kb on + strand, within PS417_23925at 5178.964 kb on - strand, within PS417_23925at 5178.964 kb on - strand, within PS417_23925at 5178.964 kb on - strand, within PS417_23925at 5179.047 kb on + strand, within PS417_23925at 5179.119 kb on + strand, within PS417_23925at 5179.119 kb on + strand, within PS417_23925at 5179.119 kb on + strand, within PS417_23925at 5179.119 kb on + strand, within PS417_23925at 5179.119 kb on + strand, within PS417_23925at 5179.119 kb on + strand, within PS417_23925at 5179.119 kb on + strand, within PS417_23925at 5179.119 kb on + strand, within PS417_23925at 5179.120 kb on - strand, within PS417_23925at 5179.120 kb on - strand, within PS417_23925at 5179.120 kb on - strand, within PS417_23925at 5179.120 kb on - strand, within PS417_23925at 5179.129 kb on - strand, within PS417_23925at 5179.182 kb on + strand, within PS417_23925at 5179.369 kb on - strand, within PS417_23925at 5179.507 kb on + strand, within PS417_23925at 5179.608 kb on + strand, within PS417_23925at 5179.608 kb on + strand, within PS417_23925at 5179.609 kb on - strand, within PS417_23925at 5179.639 kb on - strand, within PS417_23925at 5179.662 kb on + strand, within PS417_23925at 5179.662 kb on + strand, within PS417_23925at 5179.705 kb on - strand, within PS417_23925at 5179.854 kb on + strand, within PS417_23925at 5179.854 kb on + strand, within PS417_23925at 5179.854 kb on + strand, within PS417_23925at 5179.855 kb on - strand, within PS417_23925at 5179.855 kb on - strand, within PS417_23925at 5179.855 kb on - strand, within PS417_23925at 5179.855 kb on - strand, within PS417_23925at 5179.855 kb on - strand, within PS417_23925at 5179.928 kb on + strand, within PS417_23925at 5180.060 kb on + strandat 5180.638 kb on + strand, within PS417_23930at 5180.639 kb on - strand, within PS417_23930at 5180.641 kb on + strand, within PS417_23930at 5180.642 kb on - strand, within PS417_23930at 5180.642 kb on - strand, within PS417_23930at 5180.642 kb on - strand, within PS417_23930at 5180.642 kb on - strand, within PS417_23930at 5180.642 kb on - strand, within PS417_23930at 5180.741 kb on + strandat 5180.741 kb on + strand, within PS417_23930at 5181.021 kb on + strandat 5181.021 kb on + strandat 5181.021 kb on + strandat 5181.021 kb on + strandat 5181.022 kb on - strandat 5181.022 kb on - strandat 5181.022 kb on - strandat 5181.028 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
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5,178,054 + -1.9
5,178,151 - +1.9
5,178,255 + -0.8
5,178,255 + +0.6
5,178,255 + -0.4
5,178,256 - -2.0
5,178,256 - -0.7
5,178,257 + -1.6
5,178,258 - +0.3
5,178,293 + +0.1
5,178,417 + PS417_23925 0.12 -1.6
5,178,417 + +0.1
5,178,418 - PS417_23925 0.12 -0.7
5,178,594 + PS417_23925 0.21 -2.1
5,178,594 + PS417_23925 0.21 +1.6
5,178,594 + PS417_23925 0.21 +1.6
5,178,595 - PS417_23925 0.21 +1.0
5,178,595 - PS417_23925 0.21 -0.6
5,178,595 - PS417_23925 0.21 +0.5
5,178,595 - PS417_23925 0.21 -0.7
5,178,705 - PS417_23925 0.27 -0.0
5,178,776 + -0.1
5,178,776 + PS417_23925 0.30 -0.2
5,178,776 + PS417_23925 0.30 -0.0
5,178,777 - PS417_23925 0.30 +0.2
5,178,885 + PS417_23925 0.36 +1.4
5,178,885 + PS417_23925 0.36 +5.1
5,178,963 + -0.1
5,178,963 + PS417_23925 0.40 +1.3
5,178,964 - PS417_23925 0.40 -0.0
5,178,964 - PS417_23925 0.40 -1.3
5,178,964 - PS417_23925 0.40 +0.4
5,179,047 + PS417_23925 0.44 -0.5
5,179,119 + PS417_23925 0.48 +0.9
5,179,119 + PS417_23925 0.48 +0.2
5,179,119 + PS417_23925 0.48 -0.0
5,179,119 + PS417_23925 0.48 +1.1
5,179,119 + PS417_23925 0.48 +0.7
5,179,119 + PS417_23925 0.48 -0.4
5,179,119 + PS417_23925 0.48 -0.2
5,179,119 + PS417_23925 0.48 +1.1
5,179,120 - PS417_23925 0.48 +0.2
5,179,120 - PS417_23925 0.48 -0.6
5,179,120 - PS417_23925 0.48 +0.9
5,179,120 - PS417_23925 0.48 +0.6
5,179,129 - PS417_23925 0.49 +1.5
5,179,182 + PS417_23925 0.51 -1.1
5,179,369 - PS417_23925 0.61 +0.7
5,179,507 + PS417_23925 0.68 -3.2
5,179,608 + PS417_23925 0.73 -0.2
5,179,608 + PS417_23925 0.73 +0.0
5,179,609 - PS417_23925 0.73 +0.3
5,179,639 - PS417_23925 0.75 +0.2
5,179,662 + PS417_23925 0.76 +0.8
5,179,662 + PS417_23925 0.76 +1.3
5,179,705 - PS417_23925 0.78 -0.5
5,179,854 + PS417_23925 0.86 -2.9
5,179,854 + PS417_23925 0.86 +0.6
5,179,854 + PS417_23925 0.86 -1.5
5,179,855 - PS417_23925 0.86 +2.1
5,179,855 - PS417_23925 0.86 +0.9
5,179,855 - PS417_23925 0.86 -0.7
5,179,855 - PS417_23925 0.86 +0.5
5,179,855 - PS417_23925 0.86 -0.4
5,179,928 + PS417_23925 0.90 -0.9
5,180,060 + +0.1
5,180,638 + PS417_23930 0.57 +0.1
5,180,639 - PS417_23930 0.57 -1.0
5,180,641 + PS417_23930 0.58 -0.6
5,180,642 - PS417_23930 0.58 -0.2
5,180,642 - PS417_23930 0.58 -0.3
5,180,642 - PS417_23930 0.58 +0.9
5,180,642 - PS417_23930 0.58 +0.2
5,180,642 - PS417_23930 0.58 +1.3
5,180,741 + +1.9
5,180,741 + PS417_23930 0.69 -1.2
5,181,021 + +1.0
5,181,021 + +0.8
5,181,021 + +0.8
5,181,021 + +1.1
5,181,022 - -0.4
5,181,022 - +2.7
5,181,022 - -0.1
5,181,028 + -0.7

Or see this region's nucleotide sequence