Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21660 and PS417_21665 are separated by 146 nucleotides PS417_21665 and PS417_21670 are separated by 455 nucleotides
PS417_21660: PS417_21660 - alanyl-tRNA synthetase, at 4,696,388 to 4,699,006
_21660
PS417_21665: PS417_21665 - threonine aldolase, at 4,699,153 to 4,700,157
_21665
PS417_21670: PS417_21670 - 6,7-dimethyl-8-ribityllumazine synthase, at 4,700,613 to 4,701,119
_21670
Position (kb) 4699
4700
4701 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4699.084 kb on - strand at 4699.106 kb on - strand at 4699.106 kb on - strand at 4699.119 kb on - strand at 4699.317 kb on - strand, within PS417_21665 at 4699.317 kb on - strand, within PS417_21665 at 4699.317 kb on - strand, within PS417_21665 at 4699.433 kb on + strand, within PS417_21665 at 4699.434 kb on - strand, within PS417_21665 at 4699.434 kb on - strand, within PS417_21665 at 4699.434 kb on - strand, within PS417_21665 at 4699.640 kb on + strand, within PS417_21665 at 4699.723 kb on + strand, within PS417_21665 at 4699.892 kb on + strand, within PS417_21665 at 4699.893 kb on - strand, within PS417_21665 at 4699.898 kb on + strand, within PS417_21665 at 4699.898 kb on + strand, within PS417_21665 at 4699.899 kb on - strand, within PS417_21665 at 4699.899 kb on - strand, within PS417_21665 at 4699.903 kb on - strand, within PS417_21665 at 4699.926 kb on - strand, within PS417_21665 at 4700.064 kb on - strand at 4700.191 kb on + strand at 4700.272 kb on + strand at 4700.272 kb on + strand at 4700.272 kb on + strand at 4700.272 kb on + strand at 4700.402 kb on + strand at 4700.402 kb on + strand at 4700.403 kb on - strand at 4700.403 kb on - strand at 4700.492 kb on + strand at 4700.492 kb on + strand at 4700.492 kb on + strand at 4700.525 kb on + strand at 4700.525 kb on + strand at 4700.525 kb on + strand at 4700.526 kb on - strand at 4700.526 kb on - strand at 4700.526 kb on - strand at 4700.540 kb on + strand at 4700.540 kb on + strand at 4700.540 kb on + strand at 4700.540 kb on + strand at 4700.541 kb on - strand at 4700.541 kb on - strand at 4700.541 kb on - strand at 4700.559 kb on + strand at 4700.880 kb on + strand, within PS417_21670 at 4700.881 kb on - strand, within PS417_21670 at 4701.053 kb on + strand, within PS417_21670 at 4701.053 kb on + strand, within PS417_21670 at 4701.053 kb on + strand, within PS417_21670 at 4701.053 kb on + strand, within PS417_21670 at 4701.054 kb on - strand, within PS417_21670
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days remove 4,699,084 - -0.9 4,699,106 - -1.5 4,699,106 - -1.2 4,699,119 - -0.5 4,699,317 - PS417_21665 0.16 +0.2 4,699,317 - PS417_21665 0.16 -0.1 4,699,317 - PS417_21665 0.16 +0.8 4,699,433 + PS417_21665 0.28 -0.2 4,699,434 - PS417_21665 0.28 -1.1 4,699,434 - PS417_21665 0.28 +0.2 4,699,434 - PS417_21665 0.28 -0.7 4,699,640 + PS417_21665 0.48 -0.5 4,699,723 + PS417_21665 0.57 +0.5 4,699,892 + PS417_21665 0.74 +0.1 4,699,893 - PS417_21665 0.74 -0.4 4,699,898 + PS417_21665 0.74 -0.1 4,699,898 + PS417_21665 0.74 -1.7 4,699,899 - PS417_21665 0.74 -0.4 4,699,899 - PS417_21665 0.74 -1.7 4,699,903 - PS417_21665 0.75 -1.0 4,699,926 - PS417_21665 0.77 -0.4 4,700,064 - +0.2 4,700,191 + +0.6 4,700,272 + +0.8 4,700,272 + -1.3 4,700,272 + +0.5 4,700,272 + +1.3 4,700,402 + -2.0 4,700,402 + +0.4 4,700,403 - -0.1 4,700,403 - +0.3 4,700,492 + -0.9 4,700,492 + -0.3 4,700,492 + -2.6 4,700,525 + +3.3 4,700,525 + -0.6 4,700,525 + +0.5 4,700,526 - +1.4 4,700,526 - +0.7 4,700,526 - +1.0 4,700,540 + +0.8 4,700,540 + +1.2 4,700,540 + -0.1 4,700,540 + -0.9 4,700,541 - -0.8 4,700,541 - +0.6 4,700,541 - -0.9 4,700,559 + +0.8 4,700,880 + PS417_21670 0.53 +0.8 4,700,881 - PS417_21670 0.53 +0.2 4,701,053 + PS417_21670 0.87 +0.1 4,701,053 + PS417_21670 0.87 +1.1 4,701,053 + PS417_21670 0.87 +0.9 4,701,053 + PS417_21670 0.87 +1.7 4,701,054 - PS417_21670 0.87 +0.3
Or see this region's nucleotide sequence