Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09375 and PS417_09380 overlap by 4 nucleotides PS417_09380 and PS417_09385 overlap by 4 nucleotides PS417_09385 and PS417_09390 are separated by 19 nucleotides PS417_09390 and PS417_09395 overlap by 4 nucleotides PS417_09395 and PS417_09400 overlap by 4 nucleotides
PS417_09375: PS417_09375 - zinc ABC transporter permease, at 2,033,503 to 2,034,402
_09375
PS417_09380: PS417_09380 - manganese ABC transporter ATP-binding protein, at 2,034,399 to 2,035,145
_09380
PS417_09385: PS417_09385 - ABC transporter substrate-binding protein, at 2,035,142 to 2,036,062
_09385
PS417_09390: PS417_09390 - hypothetical protein, at 2,036,082 to 2,036,642
_09390
PS417_09395: PS417_09395 - hypothetical protein, at 2,036,639 to 2,036,968
_09395
PS417_09400: PS417_09400 - thiamine pyrophosphate-binding protein, at 2,036,965 to 2,037,501
_09400
Position (kb) 2035
2036
2037 Strain fitness (log2 ratio) -2
-1
0
1 at 2034.649 kb on - strand, within PS417_09380 at 2035.566 kb on + strand, within PS417_09385 at 2035.933 kb on - strand, within PS417_09385 at 2035.939 kb on - strand, within PS417_09385 at 2036.591 kb on - strand at 2036.909 kb on - strand, within PS417_09395
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days remove 2,034,649 - PS417_09380 0.33 -2.2 2,035,566 + PS417_09385 0.46 +0.2 2,035,933 - PS417_09385 0.86 +0.5 2,035,939 - PS417_09385 0.87 +0.9 2,036,591 - +0.9 2,036,909 - PS417_09395 0.82 -0.1
Or see this region's nucleotide sequence