Strain Fitness in Pseudomonas simiae WCS417 around PS417_05420

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05415 and PS417_05420 are separated by 104 nucleotidesPS417_05420 and PS417_05425 overlap by 4 nucleotides PS417_05415: PS417_05415 - glutamate synthase, at 1,214,473 to 1,216,092 _05415 PS417_05420: PS417_05420 - ATPase, at 1,216,197 to 1,217,597 _05420 PS417_05425: PS417_05425 - histidine kinase, at 1,217,594 to 1,219,411 _05425 Position (kb) 1216 1217 1218Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1216.092 kb on + strandat 1216.118 kb on - strandat 1216.118 kb on - strandat 1216.272 kb on - strandat 1216.293 kb on - strandat 1216.585 kb on + strand, within PS417_05420at 1216.585 kb on + strand, within PS417_05420at 1216.586 kb on - strand, within PS417_05420at 1216.586 kb on - strand, within PS417_05420at 1216.698 kb on + strand, within PS417_05420at 1216.880 kb on - strand, within PS417_05420at 1216.880 kb on - strand, within PS417_05420at 1217.091 kb on + strand, within PS417_05420at 1217.091 kb on + strand, within PS417_05420at 1217.091 kb on + strand, within PS417_05420at 1217.092 kb on - strand, within PS417_05420at 1217.092 kb on - strand, within PS417_05420at 1217.240 kb on - strand, within PS417_05420at 1217.247 kb on - strand, within PS417_05420at 1217.249 kb on - strand, within PS417_05420at 1217.292 kb on + strand, within PS417_05420at 1217.293 kb on - strand, within PS417_05420at 1217.360 kb on - strand, within PS417_05420at 1217.417 kb on - strand, within PS417_05420at 1217.438 kb on + strand, within PS417_05420at 1217.483 kb on + strandat 1217.620 kb on + strandat 1217.635 kb on + strandat 1217.750 kb on - strandat 1217.827 kb on + strand, within PS417_05425at 1217.827 kb on + strand, within PS417_05425at 1217.827 kb on + strand, within PS417_05425at 1217.828 kb on - strand, within PS417_05425at 1217.895 kb on + strand, within PS417_05425at 1217.896 kb on - strand, within PS417_05425at 1217.896 kb on - strand, within PS417_05425at 1217.896 kb on - strand, within PS417_05425at 1217.974 kb on - strand, within PS417_05425at 1218.205 kb on - strand, within PS417_05425at 1218.363 kb on - strand, within PS417_05425at 1218.565 kb on - strand, within PS417_05425at 1218.565 kb on - strand, within PS417_05425

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
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1,216,092 + -0.2
1,216,118 - +1.1
1,216,118 - -0.1
1,216,272 - -0.0
1,216,293 - +0.1
1,216,585 + PS417_05420 0.28 +2.6
1,216,585 + PS417_05420 0.28 +2.1
1,216,586 - PS417_05420 0.28 -1.1
1,216,586 - PS417_05420 0.28 +1.0
1,216,698 + PS417_05420 0.36 +1.4
1,216,880 - PS417_05420 0.49 +0.5
1,216,880 - PS417_05420 0.49 +0.2
1,217,091 + PS417_05420 0.64 -0.8
1,217,091 + PS417_05420 0.64 -3.3
1,217,091 + PS417_05420 0.64 +0.0
1,217,092 - PS417_05420 0.64 +0.3
1,217,092 - PS417_05420 0.64 -0.6
1,217,240 - PS417_05420 0.74 -0.6
1,217,247 - PS417_05420 0.75 -0.5
1,217,249 - PS417_05420 0.75 -0.4
1,217,292 + PS417_05420 0.78 -0.5
1,217,293 - PS417_05420 0.78 +0.1
1,217,360 - PS417_05420 0.83 +0.6
1,217,417 - PS417_05420 0.87 +0.0
1,217,438 + PS417_05420 0.89 +0.3
1,217,483 + +0.4
1,217,620 + +0.4
1,217,635 + -0.8
1,217,750 - +0.1
1,217,827 + PS417_05425 0.13 -0.3
1,217,827 + PS417_05425 0.13 +0.5
1,217,827 + PS417_05425 0.13 -0.9
1,217,828 - PS417_05425 0.13 +0.5
1,217,895 + PS417_05425 0.17 -0.5
1,217,896 - PS417_05425 0.17 -0.4
1,217,896 - PS417_05425 0.17 +0.0
1,217,896 - PS417_05425 0.17 +0.3
1,217,974 - PS417_05425 0.21 -0.2
1,218,205 - PS417_05425 0.34 +0.7
1,218,363 - PS417_05425 0.42 -0.8
1,218,565 - PS417_05425 0.53 -0.2
1,218,565 - PS417_05425 0.53 -0.6

Or see this region's nucleotide sequence