Strain Fitness in Pseudomonas putida KT2440 around PP_5098

Experiment: 3-Hydroxyhexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5097 and PP_5098 overlap by 11 nucleotidesPP_5098 and PP_5099 are separated by 22 nucleotidesPP_5099 and PP_5100 overlap by 4 nucleotides PP_5097: PP_5097 - homoserine O-acetyltransferase, at 5,820,251 to 5,821,390 _5097 PP_5098: PP_5098 - methionine biosynthesis protein MetW, at 5,821,380 to 5,822,018 _5098 PP_5099: PP_5099 - conserved protein of unknown function, at 5,822,041 to 5,822,475 _5099 PP_5100: PP_5100 - dITP/XTP pyrophosphatase, at 5,822,472 to 5,823,068 _5100 Position (kb) 5821 5822 5823Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 5820.452 kb on + strand, within PP_5097at 5820.615 kb on - strand, within PP_5097at 5820.634 kb on - strand, within PP_5097at 5820.643 kb on - strand, within PP_5097at 5820.759 kb on - strand, within PP_5097at 5820.946 kb on + strand, within PP_5097at 5820.946 kb on + strand, within PP_5097at 5820.946 kb on + strand, within PP_5097at 5820.946 kb on + strand, within PP_5097at 5820.946 kb on + strand, within PP_5097at 5820.947 kb on - strand, within PP_5097at 5820.947 kb on - strand, within PP_5097at 5820.947 kb on - strand, within PP_5097at 5820.947 kb on - strand, within PP_5097at 5820.947 kb on - strand, within PP_5097at 5820.947 kb on - strand, within PP_5097at 5820.947 kb on - strand, within PP_5097at 5820.947 kb on - strand, within PP_5097at 5820.947 kb on - strand, within PP_5097at 5820.947 kb on - strand, within PP_5097at 5820.947 kb on - strand, within PP_5097at 5820.947 kb on - strand, within PP_5097at 5820.947 kb on - strand, within PP_5097at 5820.950 kb on + strand, within PP_5097at 5820.950 kb on + strand, within PP_5097at 5820.951 kb on - strand, within PP_5097at 5821.014 kb on - strand, within PP_5097at 5821.049 kb on + strand, within PP_5097at 5821.049 kb on + strand, within PP_5097at 5821.049 kb on + strand, within PP_5097at 5821.100 kb on + strand, within PP_5097at 5821.100 kb on + strand, within PP_5097at 5821.101 kb on - strand, within PP_5097at 5821.127 kb on + strand, within PP_5097at 5821.127 kb on + strand, within PP_5097at 5821.193 kb on + strand, within PP_5097at 5821.194 kb on - strand, within PP_5097at 5821.290 kb on - strandat 5821.346 kb on + strandat 5821.347 kb on - strandat 5821.347 kb on - strandat 5821.347 kb on - strandat 5821.367 kb on + strandat 5821.367 kb on + strandat 5821.367 kb on + strandat 5821.367 kb on + strandat 5821.368 kb on - strandat 5821.368 kb on - strandat 5821.451 kb on - strand, within PP_5098at 5821.545 kb on - strand, within PP_5098at 5821.545 kb on - strand, within PP_5098at 5821.669 kb on - strand, within PP_5098at 5821.758 kb on + strand, within PP_5098at 5821.803 kb on + strand, within PP_5098at 5821.803 kb on + strand, within PP_5098at 5821.803 kb on + strand, within PP_5098at 5821.803 kb on + strand, within PP_5098at 5821.803 kb on + strand, within PP_5098at 5821.804 kb on - strand, within PP_5098at 5821.804 kb on - strand, within PP_5098at 5821.805 kb on + strand, within PP_5098at 5821.805 kb on + strand, within PP_5098at 5821.805 kb on + strand, within PP_5098at 5821.806 kb on - strand, within PP_5098at 5821.812 kb on + strand, within PP_5098at 5821.813 kb on - strand, within PP_5098at 5821.813 kb on - strand, within PP_5098at 5821.813 kb on - strand, within PP_5098at 5821.946 kb on + strand, within PP_5098at 5821.947 kb on - strand, within PP_5098at 5821.955 kb on - strandat 5821.955 kb on - strandat 5821.955 kb on - strandat 5821.971 kb on + strandat 5821.972 kb on - strandat 5822.130 kb on - strand, within PP_5099at 5822.152 kb on + strand, within PP_5099at 5822.356 kb on + strand, within PP_5099at 5822.359 kb on + strand, within PP_5099at 5822.359 kb on + strand, within PP_5099at 5822.359 kb on + strand, within PP_5099at 5822.360 kb on - strand, within PP_5099at 5822.360 kb on - strand, within PP_5099at 5822.360 kb on - strand, within PP_5099at 5822.360 kb on - strand, within PP_5099at 5822.360 kb on - strand, within PP_5099at 5822.360 kb on - strand, within PP_5099at 5822.494 kb on + strandat 5822.728 kb on - strand, within PP_5100at 5822.728 kb on - strand, within PP_5100at 5822.740 kb on - strand, within PP_5100at 5822.989 kb on + strand, within PP_5100at 5822.990 kb on - strand, within PP_5100

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxyhexanoic (C)
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5,820,452 + PP_5097 0.18 -0.3
5,820,615 - PP_5097 0.32 -3.8
5,820,634 - PP_5097 0.34 -3.5
5,820,643 - PP_5097 0.34 -2.7
5,820,759 - PP_5097 0.45 -2.3
5,820,946 + PP_5097 0.61 -0.2
5,820,946 + PP_5097 0.61 -3.8
5,820,946 + PP_5097 0.61 -2.2
5,820,946 + PP_5097 0.61 -2.2
5,820,946 + PP_5097 0.61 -3.4
5,820,947 - PP_5097 0.61 -2.4
5,820,947 - PP_5097 0.61 +0.2
5,820,947 - PP_5097 0.61 -3.6
5,820,947 - PP_5097 0.61 -1.8
5,820,947 - PP_5097 0.61 -1.4
5,820,947 - PP_5097 0.61 -1.4
5,820,947 - PP_5097 0.61 -1.1
5,820,947 - PP_5097 0.61 -2.4
5,820,947 - PP_5097 0.61 -4.0
5,820,947 - PP_5097 0.61 -3.5
5,820,947 - PP_5097 0.61 -3.0
5,820,947 - PP_5097 0.61 -4.4
5,820,947 - PP_5097 0.61 +0.9
5,820,950 + PP_5097 0.61 -2.2
5,820,950 + PP_5097 0.61 -4.1
5,820,951 - PP_5097 0.61 -0.9
5,821,014 - PP_5097 0.67 -4.5
5,821,049 + PP_5097 0.70 -2.3
5,821,049 + PP_5097 0.70 -2.4
5,821,049 + PP_5097 0.70 -2.5
5,821,100 + PP_5097 0.74 -4.1
5,821,100 + PP_5097 0.74 -0.1
5,821,101 - PP_5097 0.75 -0.5
5,821,127 + PP_5097 0.77 -3.5
5,821,127 + PP_5097 0.77 -2.4
5,821,193 + PP_5097 0.83 -2.3
5,821,194 - PP_5097 0.83 -2.6
5,821,290 - -1.8
5,821,346 + -2.6
5,821,347 - +1.5
5,821,347 - -0.6
5,821,347 - -1.9
5,821,367 + -1.9
5,821,367 + -2.6
5,821,367 + -3.7
5,821,367 + -2.9
5,821,368 - -3.3
5,821,368 - -3.3
5,821,451 - PP_5098 0.11 -1.9
5,821,545 - PP_5098 0.26 -2.4
5,821,545 - PP_5098 0.26 -0.3
5,821,669 - PP_5098 0.45 -0.3
5,821,758 + PP_5098 0.59 -3.1
5,821,803 + PP_5098 0.66 -4.0
5,821,803 + PP_5098 0.66 -2.0
5,821,803 + PP_5098 0.66 -3.0
5,821,803 + PP_5098 0.66 -1.1
5,821,803 + PP_5098 0.66 -4.5
5,821,804 - PP_5098 0.66 -5.6
5,821,804 - PP_5098 0.66 -2.4
5,821,805 + PP_5098 0.67 -3.2
5,821,805 + PP_5098 0.67 -3.3
5,821,805 + PP_5098 0.67 -3.1
5,821,806 - PP_5098 0.67 -2.1
5,821,812 + PP_5098 0.68 -2.5
5,821,813 - PP_5098 0.68 -1.8
5,821,813 - PP_5098 0.68 -2.0
5,821,813 - PP_5098 0.68 -1.9
5,821,946 + PP_5098 0.89 -1.7
5,821,947 - PP_5098 0.89 -2.2
5,821,955 - +0.9
5,821,955 - -2.8
5,821,955 - -1.4
5,821,971 + -2.8
5,821,972 - -1.4
5,822,130 - PP_5099 0.20 -1.9
5,822,152 + PP_5099 0.26 +0.5
5,822,356 + PP_5099 0.72 -0.5
5,822,359 + PP_5099 0.73 +0.3
5,822,359 + PP_5099 0.73 +0.0
5,822,359 + PP_5099 0.73 +1.4
5,822,360 - PP_5099 0.73 -0.1
5,822,360 - PP_5099 0.73 -0.1
5,822,360 - PP_5099 0.73 -0.8
5,822,360 - PP_5099 0.73 -1.3
5,822,360 - PP_5099 0.73 +0.4
5,822,360 - PP_5099 0.73 +1.1
5,822,494 + +0.4
5,822,728 - PP_5100 0.43 +0.2
5,822,728 - PP_5100 0.43 -0.5
5,822,740 - PP_5100 0.45 -0.2
5,822,989 + PP_5100 0.87 +0.7
5,822,990 - PP_5100 0.87 +0.6

Or see this region's nucleotide sequence