Strain Fitness in Pseudomonas putida KT2440 around PP_5085

Experiment: 3-Hydroxyhexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5084 and PP_5085 are separated by 154 nucleotidesPP_5085 and PP_5086 are separated by 177 nucleotides PP_5084: PP_5084 - penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase, at 5,805,412 to 5,807,865 _5084 PP_5085: PP_5085 - malic enzyme B, at 5,808,020 to 5,809,288 _5085 PP_5086: PP_5086 - putative nuclease (SNase domain protein), at 5,809,466 to 5,810,233 _5086 Position (kb) 5808 5809 5810Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5807.032 kb on + strand, within PP_5084at 5807.032 kb on + strand, within PP_5084at 5807.032 kb on + strand, within PP_5084at 5807.032 kb on + strand, within PP_5084at 5807.032 kb on + strand, within PP_5084at 5807.033 kb on - strand, within PP_5084at 5807.033 kb on - strand, within PP_5084at 5807.033 kb on - strand, within PP_5084at 5807.155 kb on + strand, within PP_5084at 5807.155 kb on + strand, within PP_5084at 5807.155 kb on + strand, within PP_5084at 5807.156 kb on - strand, within PP_5084at 5807.156 kb on - strand, within PP_5084at 5807.171 kb on - strand, within PP_5084at 5807.385 kb on + strand, within PP_5084at 5807.386 kb on - strand, within PP_5084at 5807.392 kb on + strand, within PP_5084at 5807.392 kb on + strand, within PP_5084at 5807.392 kb on + strand, within PP_5084at 5807.392 kb on + strand, within PP_5084at 5807.392 kb on + strand, within PP_5084at 5807.393 kb on - strand, within PP_5084at 5807.393 kb on - strand, within PP_5084at 5807.393 kb on - strand, within PP_5084at 5807.393 kb on - strand, within PP_5084at 5807.393 kb on - strand, within PP_5084at 5807.524 kb on + strand, within PP_5084at 5807.524 kb on + strand, within PP_5084at 5807.525 kb on - strand, within PP_5084at 5807.525 kb on - strand, within PP_5084at 5807.536 kb on + strand, within PP_5084at 5807.537 kb on - strand, within PP_5084at 5807.537 kb on - strand, within PP_5084at 5807.749 kb on + strandat 5807.863 kb on + strandat 5807.864 kb on - strandat 5807.864 kb on - strandat 5807.864 kb on - strandat 5808.003 kb on + strandat 5808.165 kb on + strand, within PP_5085at 5808.165 kb on + strand, within PP_5085at 5808.165 kb on + strand, within PP_5085at 5808.165 kb on + strand, within PP_5085at 5808.165 kb on + strand, within PP_5085at 5808.166 kb on - strand, within PP_5085at 5808.198 kb on + strand, within PP_5085at 5808.283 kb on + strand, within PP_5085at 5808.283 kb on + strand, within PP_5085at 5808.284 kb on - strand, within PP_5085at 5808.284 kb on - strand, within PP_5085at 5808.284 kb on - strand, within PP_5085at 5808.515 kb on + strand, within PP_5085at 5808.515 kb on + strand, within PP_5085at 5808.515 kb on + strand, within PP_5085at 5808.516 kb on - strand, within PP_5085at 5808.516 kb on - strand, within PP_5085at 5808.588 kb on + strand, within PP_5085at 5808.589 kb on - strand, within PP_5085at 5808.589 kb on - strand, within PP_5085at 5808.628 kb on + strand, within PP_5085at 5808.628 kb on + strand, within PP_5085at 5808.628 kb on + strand, within PP_5085at 5808.671 kb on + strand, within PP_5085at 5808.671 kb on + strand, within PP_5085at 5808.672 kb on - strand, within PP_5085at 5808.672 kb on - strand, within PP_5085at 5808.672 kb on - strand, within PP_5085at 5808.797 kb on - strand, within PP_5085at 5808.847 kb on + strand, within PP_5085at 5809.114 kb on - strand, within PP_5085at 5809.119 kb on + strand, within PP_5085at 5809.119 kb on + strand, within PP_5085at 5809.120 kb on - strand, within PP_5085at 5809.307 kb on + strandat 5809.307 kb on + strandat 5809.307 kb on + strandat 5809.307 kb on + strandat 5809.307 kb on + strandat 5809.308 kb on - strandat 5809.308 kb on - strandat 5809.308 kb on - strandat 5809.308 kb on - strandat 5809.333 kb on - strandat 5809.386 kb on + strandat 5809.391 kb on + strandat 5809.400 kb on - strandat 5809.400 kb on - strandat 5809.420 kb on + strandat 5809.420 kb on + strandat 5809.421 kb on - strandat 5809.702 kb on + strand, within PP_5086at 5809.711 kb on + strand, within PP_5086at 5809.763 kb on + strand, within PP_5086at 5809.841 kb on + strand, within PP_5086at 5809.841 kb on + strand, within PP_5086at 5809.841 kb on + strand, within PP_5086at 5809.841 kb on + strand, within PP_5086at 5809.842 kb on - strand, within PP_5086at 5809.846 kb on + strand, within PP_5086at 5809.846 kb on + strand, within PP_5086at 5809.847 kb on - strand, within PP_5086at 5809.883 kb on - strand, within PP_5086at 5809.920 kb on + strand, within PP_5086at 5809.920 kb on + strand, within PP_5086at 5809.920 kb on + strand, within PP_5086at 5809.921 kb on - strand, within PP_5086at 5809.921 kb on - strand, within PP_5086at 5809.921 kb on - strand, within PP_5086at 5809.944 kb on + strand, within PP_5086at 5809.944 kb on + strand, within PP_5086at 5809.944 kb on + strand, within PP_5086at 5809.944 kb on + strand, within PP_5086at 5809.945 kb on - strand, within PP_5086at 5809.945 kb on - strand, within PP_5086at 5809.945 kb on - strand, within PP_5086at 5809.945 kb on - strand, within PP_5086at 5809.945 kb on - strand, within PP_5086at 5809.954 kb on + strand, within PP_5086at 5810.037 kb on + strand, within PP_5086at 5810.050 kb on + strand, within PP_5086at 5810.051 kb on - strand, within PP_5086at 5810.051 kb on - strand, within PP_5086

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxyhexanoic (C)
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5,807,032 + PP_5084 0.66 +0.6
5,807,032 + PP_5084 0.66 +1.5
5,807,032 + PP_5084 0.66 +0.0
5,807,032 + PP_5084 0.66 +0.2
5,807,032 + PP_5084 0.66 +0.4
5,807,033 - PP_5084 0.66 +1.0
5,807,033 - PP_5084 0.66 -0.7
5,807,033 - PP_5084 0.66 -0.1
5,807,155 + PP_5084 0.71 +0.3
5,807,155 + PP_5084 0.71 +0.5
5,807,155 + PP_5084 0.71 -0.2
5,807,156 - PP_5084 0.71 -0.1
5,807,156 - PP_5084 0.71 +1.3
5,807,171 - PP_5084 0.72 +0.0
5,807,385 + PP_5084 0.80 +2.5
5,807,386 - PP_5084 0.80 -0.9
5,807,392 + PP_5084 0.81 -0.2
5,807,392 + PP_5084 0.81 +0.7
5,807,392 + PP_5084 0.81 +0.9
5,807,392 + PP_5084 0.81 -0.8
5,807,392 + PP_5084 0.81 -0.9
5,807,393 - PP_5084 0.81 -1.7
5,807,393 - PP_5084 0.81 -2.1
5,807,393 - PP_5084 0.81 -0.4
5,807,393 - PP_5084 0.81 -0.1
5,807,393 - PP_5084 0.81 -1.1
5,807,524 + PP_5084 0.86 -0.2
5,807,524 + PP_5084 0.86 -1.6
5,807,525 - PP_5084 0.86 -0.4
5,807,525 - PP_5084 0.86 -0.1
5,807,536 + PP_5084 0.87 +0.3
5,807,537 - PP_5084 0.87 +1.3
5,807,537 - PP_5084 0.87 +0.2
5,807,749 + +0.9
5,807,863 + +0.7
5,807,864 - -1.1
5,807,864 - -0.0
5,807,864 - +0.1
5,808,003 + -0.4
5,808,165 + PP_5085 0.11 -2.9
5,808,165 + PP_5085 0.11 -1.0
5,808,165 + PP_5085 0.11 -1.1
5,808,165 + PP_5085 0.11 -1.7
5,808,165 + PP_5085 0.11 -1.3
5,808,166 - PP_5085 0.12 -2.4
5,808,198 + PP_5085 0.14 -0.7
5,808,283 + PP_5085 0.21 -0.8
5,808,283 + PP_5085 0.21 -3.2
5,808,284 - PP_5085 0.21 -0.3
5,808,284 - PP_5085 0.21 +0.3
5,808,284 - PP_5085 0.21 -1.4
5,808,515 + PP_5085 0.39 -0.1
5,808,515 + PP_5085 0.39 -2.6
5,808,515 + PP_5085 0.39 -1.1
5,808,516 - PP_5085 0.39 -1.7
5,808,516 - PP_5085 0.39 +0.2
5,808,588 + PP_5085 0.45 -1.0
5,808,589 - PP_5085 0.45 -2.1
5,808,589 - PP_5085 0.45 -0.1
5,808,628 + PP_5085 0.48 -1.0
5,808,628 + PP_5085 0.48 -0.7
5,808,628 + PP_5085 0.48 -1.7
5,808,671 + PP_5085 0.51 -1.6
5,808,671 + PP_5085 0.51 -0.4
5,808,672 - PP_5085 0.51 -2.8
5,808,672 - PP_5085 0.51 -2.7
5,808,672 - PP_5085 0.51 -0.2
5,808,797 - PP_5085 0.61 -2.6
5,808,847 + PP_5085 0.65 -3.6
5,809,114 - PP_5085 0.86 -2.9
5,809,119 + PP_5085 0.87 +0.5
5,809,119 + PP_5085 0.87 -3.0
5,809,120 - PP_5085 0.87 -0.5
5,809,307 + -2.6
5,809,307 + -1.2
5,809,307 + -1.7
5,809,307 + -1.1
5,809,307 + -0.8
5,809,308 - -1.3
5,809,308 - -0.1
5,809,308 - -0.7
5,809,308 - -0.6
5,809,333 - -0.7
5,809,386 + -0.4
5,809,391 + -1.4
5,809,400 - +0.9
5,809,400 - +0.9
5,809,420 + -0.1
5,809,420 + -0.6
5,809,421 - +0.2
5,809,702 + PP_5086 0.31 -0.8
5,809,711 + PP_5086 0.32 -0.1
5,809,763 + PP_5086 0.39 +0.4
5,809,841 + PP_5086 0.49 -0.6
5,809,841 + PP_5086 0.49 +0.1
5,809,841 + PP_5086 0.49 +1.0
5,809,841 + PP_5086 0.49 +1.9
5,809,842 - PP_5086 0.49 +0.1
5,809,846 + PP_5086 0.49 +0.5
5,809,846 + PP_5086 0.49 +0.5
5,809,847 - PP_5086 0.50 -0.0
5,809,883 - PP_5086 0.54 -0.2
5,809,920 + PP_5086 0.59 +0.9
5,809,920 + PP_5086 0.59 +0.2
5,809,920 + PP_5086 0.59 +0.2
5,809,921 - PP_5086 0.59 -0.1
5,809,921 - PP_5086 0.59 +0.5
5,809,921 - PP_5086 0.59 -0.2
5,809,944 + PP_5086 0.62 +0.1
5,809,944 + PP_5086 0.62 -0.1
5,809,944 + PP_5086 0.62 +0.0
5,809,944 + PP_5086 0.62 -0.1
5,809,945 - PP_5086 0.62 +0.1
5,809,945 - PP_5086 0.62 -0.4
5,809,945 - PP_5086 0.62 -0.7
5,809,945 - PP_5086 0.62 -0.3
5,809,945 - PP_5086 0.62 -0.9
5,809,954 + PP_5086 0.64 +0.2
5,810,037 + PP_5086 0.74 +0.6
5,810,050 + PP_5086 0.76 -0.2
5,810,051 - PP_5086 0.76 -0.5
5,810,051 - PP_5086 0.76 -0.7

Or see this region's nucleotide sequence