Experiment: 3-Hydroxyhexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4900 and PP_4901 are separated by 140 nucleotides PP_4901 and PP_4902 are separated by 91 nucleotides PP_4902 and PP_4903 are separated by 152 nucleotides
PP_4900: PP_4900 - epoxyqueuosine reductase, at 5,570,314 to 5,571,378
_4900
PP_4901: PP_4901 - conserved inner membrane protein, at 5,571,519 to 5,572,130
_4901
PP_4902: PP_4902 - Oligoribonuclease, at 5,572,222 to 5,572,764
_4902
PP_4903: PP_4903 - Putative ribosome biogenesis GTPase RsgA, at 5,572,917 to 5,573,948
_4903
Position (kb) 5572
5573 Strain fitness (log2 ratio) -1
0
1
2 at 5571.535 kb on + strand at 5571.641 kb on - strand, within PP_4901 at 5571.688 kb on + strand, within PP_4901 at 5571.689 kb on - strand, within PP_4901 at 5571.689 kb on - strand, within PP_4901 at 5571.689 kb on - strand, within PP_4901 at 5571.732 kb on - strand, within PP_4901 at 5571.825 kb on + strand, within PP_4901 at 5571.825 kb on + strand, within PP_4901 at 5571.825 kb on + strand, within PP_4901 at 5571.825 kb on + strand, within PP_4901 at 5571.826 kb on - strand, within PP_4901 at 5571.944 kb on - strand, within PP_4901 at 5572.114 kb on + strand at 5572.115 kb on - strand at 5572.163 kb on + strand at 5572.164 kb on - strand at 5572.199 kb on + strand at 5572.199 kb on + strand at 5572.199 kb on + strand at 5572.199 kb on + strand at 5572.200 kb on - strand at 5572.204 kb on + strand at 5572.204 kb on + strand at 5572.204 kb on + strand at 5572.204 kb on + strand at 5572.205 kb on - strand at 5572.205 kb on - strand at 5572.205 kb on - strand at 5572.205 kb on - strand at 5572.205 kb on - strand at 5572.299 kb on + strand, within PP_4902 at 5572.419 kb on - strand, within PP_4902 at 5572.474 kb on - strand, within PP_4902 at 5572.653 kb on + strand, within PP_4902 at 5572.653 kb on + strand, within PP_4902 at 5572.653 kb on + strand, within PP_4902 at 5572.654 kb on - strand, within PP_4902 at 5572.654 kb on - strand, within PP_4902 at 5572.779 kb on + strand at 5572.779 kb on + strand at 5572.780 kb on - strand at 5572.780 kb on - strand at 5572.780 kb on - strand at 5572.780 kb on - strand at 5572.780 kb on - strand at 5572.780 kb on - strand at 5572.780 kb on - strand at 5572.781 kb on + strand at 5572.781 kb on + strand at 5572.782 kb on - strand at 5572.782 kb on - strand at 5572.782 kb on - strand at 5572.791 kb on + strand at 5572.791 kb on + strand at 5572.791 kb on + strand at 5572.791 kb on + strand at 5572.791 kb on + strand at 5572.792 kb on - strand at 5572.794 kb on + strand at 5572.799 kb on + strand at 5572.799 kb on + strand at 5572.800 kb on - strand at 5572.800 kb on - strand at 5572.800 kb on - strand at 5572.800 kb on - strand at 5572.843 kb on + strand at 5572.843 kb on + strand at 5572.844 kb on - strand at 5572.905 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxyhexanoic (C) remove 5,571,535 + +0.3 5,571,641 - PP_4901 0.20 -0.8 5,571,688 + PP_4901 0.28 +1.1 5,571,689 - PP_4901 0.28 -0.5 5,571,689 - PP_4901 0.28 -1.1 5,571,689 - PP_4901 0.28 -0.2 5,571,732 - PP_4901 0.35 -0.2 5,571,825 + PP_4901 0.50 -0.9 5,571,825 + PP_4901 0.50 -0.1 5,571,825 + PP_4901 0.50 -0.3 5,571,825 + PP_4901 0.50 -0.6 5,571,826 - PP_4901 0.50 +2.5 5,571,944 - PP_4901 0.69 +0.0 5,572,114 + -0.4 5,572,115 - +0.5 5,572,163 + +0.3 5,572,164 - +0.2 5,572,199 + +1.2 5,572,199 + -0.7 5,572,199 + +0.0 5,572,199 + +0.6 5,572,200 - +0.2 5,572,204 + +0.4 5,572,204 + +0.3 5,572,204 + +0.1 5,572,204 + -0.0 5,572,205 - -0.0 5,572,205 - +1.6 5,572,205 - -0.3 5,572,205 - +0.3 5,572,205 - +0.6 5,572,299 + PP_4902 0.14 -0.5 5,572,419 - PP_4902 0.36 +2.1 5,572,474 - PP_4902 0.46 +1.5 5,572,653 + PP_4902 0.79 -0.1 5,572,653 + PP_4902 0.79 -0.5 5,572,653 + PP_4902 0.79 +0.9 5,572,654 - PP_4902 0.80 -0.5 5,572,654 - PP_4902 0.80 +1.5 5,572,779 + +2.5 5,572,779 + -0.4 5,572,780 - -0.0 5,572,780 - +0.5 5,572,780 - -0.7 5,572,780 - -0.0 5,572,780 - +0.3 5,572,780 - +0.1 5,572,780 - -0.4 5,572,781 + -0.1 5,572,781 + +0.4 5,572,782 - +0.0 5,572,782 - -0.6 5,572,782 - +0.3 5,572,791 + +0.3 5,572,791 + +0.6 5,572,791 + +0.6 5,572,791 + -0.8 5,572,791 + -0.2 5,572,792 - +1.5 5,572,794 + +0.1 5,572,799 + -0.5 5,572,799 + +1.5 5,572,800 - -0.1 5,572,800 - -0.3 5,572,800 - +1.1 5,572,800 - -0.2 5,572,843 + -0.7 5,572,843 + -0.8 5,572,844 - -0.4 5,572,905 + +0.8
Or see this region's nucleotide sequence